[2026-06-04T17:08:58.844975Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:58.845909Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:58.845936Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:58.845944Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:58.845951Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXi1QT24'
[2026-06-04T17:08:58.845957Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:58.845964Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:58.845969Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:58.845973Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:08:58.845976Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:58.845980Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:58.845983Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:58.845987Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:58.845991Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:58.846699Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:58.846826Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:58.852542Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:58.853289Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:58.853546Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:58.853784Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:58.854021Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854469Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854555Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854626Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854742Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854807Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854924Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.854986Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.855100Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.855359Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.855752Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.855908Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.856166Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.856897Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.857468Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.857782Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.859602Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.860420Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.860624Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:58.860718Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.860961Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861037Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861163Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861235Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861516Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861803Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861930Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861999Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862113Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862180Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862317Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862383Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862521Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862590Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862702Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.862768Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863056Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863392Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863507Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863575Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863683Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863746Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863856Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.863938Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.864052Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.864118Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.864232Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.864298Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.864642Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865159Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865308Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865390Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865539Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865603Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865712Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865775Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865934Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.866009Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.866114Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.866200Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.866539Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.866996Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867114Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867180Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867291Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867360Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867472Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.867533Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.868343Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.868849Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.868964Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.869029Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.869140Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.869205Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.870734Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871356Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871486Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871555Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871668Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871733Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871844Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.871925Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872045Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872112Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872225Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872293Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872470Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.872665Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873370Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873438Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873553Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873622Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873735Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873797Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.873945Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.874007Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.874119Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.874180Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.890420Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.890968Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.891145Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.891232Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.891898Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.892791Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.892887Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.893160Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.893454Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.894017Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.894365Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.895133Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.895734Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.896416Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.897243Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.897526Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.898131Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:58.898688Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.899719Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.904388Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:08:58.908916Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:08:58.911543Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:08:58.915887Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:08:58.922856Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:08:58.924645Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:08:58.927240Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:08:58.928821Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:08:59.042418Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.042507Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.042529Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.042547Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.043487Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.043835Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.044191Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.044856Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.048596Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:08:59.052618Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:08:59.053280Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:08:59.055680Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:08:59.112592Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.112668Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.113639Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.114052Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.118371Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:08:59.119770Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:08:59.279388Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.280500Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.283475Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:08:59.795951Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.797059Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.800535Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:08:59.805410Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.806356Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.809756Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:08:59.870681Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.871734Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.874931Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:08:59.935946Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.936926Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.940490Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:09:00.001267Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.002324Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.005646Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:09:00.066654Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.067635Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.070744Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:09:00.132141Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.133175Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.136312Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:00.140875Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.141652Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.146607Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:09:00.174830Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.175801Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.178657Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:00.179445Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.180205Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.183639Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:09:00.244266Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.245300Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.248425Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:00.309323Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.310342Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.314054Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:09:00.374788Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.375930Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.378871Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:00.440056Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.440985Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.443744Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:00.505012Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.505963Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.509180Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:00.570356Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.571285Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.575119Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:00.635537Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.636685Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.639662Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:09:00.652690Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.653580Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.656576Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:09:00.717589Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.718497Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.721980Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:00.782792Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.783758Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.787028Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:09:00.816090Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.816983Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.819847Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:09:00.821362Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.822199Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.824740Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:09:00.854091Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.854937Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.857986Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:00.862601Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.863306Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.866277Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:00.895341Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.896127Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.899109Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:09:01.110766Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.111954Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.115464Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:09:01.176488Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.177410Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.180680Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:09:01.642845Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.643643Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.647072Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:09:01.708257Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.708347Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.709284Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.709741Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.713785Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:01.714672Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:01.726941Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.727750Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.730604Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:01.791878Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.791968Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.791991Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.792794Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.793119Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.793633Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.796210Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:01.798708Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:01.800434Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:09:01.828011Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.828109Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.829297Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.829502Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.829746Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.833169Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:09:01.833722Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.836613Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:01.837593Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:09:01.866893Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.867628Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.870357Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:09:01.883432Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.884220Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.887043Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:09:01.900260Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.900971Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.903719Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:09:01.904520Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.905142Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.907770Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:09:01.920946Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.921652Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.924439Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:09:01.937596Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.937673Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.938297Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.938687Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.942543Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:01.943407Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:09:02.003559Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.004340Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.007741Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:02.068494Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.069243Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.072439Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:02.133494Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.134226Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.137308Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:09:02.349105Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.349918Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.352829Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:02.413995Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.414080Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.414742Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.415022Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.418147Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:09:02.419139Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:09:02.479418Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.479499Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.480167Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.480518Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.484215Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:09:02.485088Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:09:02.795143Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.796059Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.799432Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:03.061028Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.062020Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.065977Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:03.126839Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.127858Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.131429Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:09:03.443245Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.444139Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.447414Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:09:03.508382Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.509018Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.512017Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:03.673593Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.674308Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.678527Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:09:03.739436Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.739526Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.740222Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.740646Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.745704Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:09:03.747576Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:03.856075Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.856726Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.859612Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:03.920939Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.921621Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.924896Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:09:03.985883Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.986577Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.990343Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:09:04.051587Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.052315Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.056179Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:09:04.116985Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.117852Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.120721Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:09:04.181981Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.182627Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.185754Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:04.214672Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.215386Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.218149Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:09:04.219110Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.219577Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.222381Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:09:04.283670Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.283747Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.283782Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.283805Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.284382Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.284874Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.285244Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.287404Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.289430Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:04.291134Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:09:04.292672Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:09:04.294084Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:04.321364Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.321922Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.324575Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.325139Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:04.325813Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.325862Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.326293Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.326655Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.327042Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.330220Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:09:04.333161Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:04.333983Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:09:04.362352Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.370148Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.370215Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.370594Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.373363Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:04.435748Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.201772Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.202295Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.205139Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:05.234276Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.348594Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.349091Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.351780Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:09:05.413241Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.878013Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.878545Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.881476Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:09:05.942842Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.407609Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.408139Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.412125Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:09:06.472786Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.096812Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.097341Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.100304Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:09:11.129483Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.129765Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.129893Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.130238Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.130788Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.134954Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:11.136456Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:11.137717Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:11.163456Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.163512Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.163812Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.164277Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.164619Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.167528Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:11.194445Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:11.197359Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.197419Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.197580Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.200076Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:11.229477Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:17.847465Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:31.965360Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:31.965360Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] 
[2026-06-04T17:09:31.965360Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:31.965440Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] 
[2026-06-04T17:09:31.965447Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:31.965453Z] [nf-5b4bd62306cb987793ea4fca61417449-c0490-lt5hf] [586_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec