.command.err - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/ea9894ce27829370069fa15089461d/.command.err
Size: 85.8 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt
Content

[2026-06-04T17:09:01.230877Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:01.233029Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:01.233043Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:01.233047Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:01.233052Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXe6U0Dz'
[2026-06-04T17:09:01.233056Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:01.233062Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:01.233065Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:01.233069Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:09:01.233073Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:01.233077Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:01.233081Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:01.233084Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:01.233088Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:01.233722Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:01.233836Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:01.239638Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:01.240840Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:01.241227Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:01.241457Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:01.241879Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242360Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242450Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242524Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242641Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242708Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242824Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.242886Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.243328Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.243826Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.244174Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.244425Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.244675Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.246915Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.247801Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.248037Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.248165Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.248371Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.248586Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:01.248760Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.249620Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250008Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250160Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250231Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250344Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250409Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250527Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250593Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250706Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250772Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250883Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250953Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.251250Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.251468Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.252447Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.252703Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.252829Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.252895Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253008Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253071Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253187Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253250Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253360Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253429Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253537Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253600Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253844Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.254449Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.254984Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255057Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255170Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255239Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255346Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255410Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255526Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255587Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255695Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255757Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.255903Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.256151Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.256630Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257189Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257312Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257378Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257487Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257556Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257670Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257733Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257844Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257910Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.258020Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.258085Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.258278Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.258577Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.260721Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.260821Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.260947Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261020Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261133Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261199Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261312Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261376Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261493Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261556Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261672Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261741Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261882Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.261964Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262071Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262137Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262253Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262320Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262429Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262493Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262621Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.262929Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.280437Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.280569Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.280641Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.280922Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.280994Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.281192Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.281265Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.281399Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.281473Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.281531Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:01.287937Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.288973Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.289323Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.289947Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.290677Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.291495Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.293016Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.294453Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.295626Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.301699Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:09:01.305892Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:01.308361Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:09:01.312097Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:01.314098Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:01.317326Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:01.318748Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:09:01.320121Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:09:01.511448Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.512732Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.516778Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:09:01.677985Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.679308Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.683043Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:09:02.245869Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.247243Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.250915Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:09:02.312108Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.313269Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.316937Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:09:02.377745Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.378847Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.382446Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:09:02.395290Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.396318Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.399661Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:02.460827Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.461874Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.465573Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:09:02.526610Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.527639Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.531522Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:02.592545Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.592633Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.593663Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.594041Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.598796Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:09:02.600274Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:09:02.909739Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.911266Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.914569Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:09:02.975799Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.975906Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.977021Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.977563Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.982505Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:03.042009Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:03.092174Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.092298Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.093397Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.093906Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.098095Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:09:03.099802Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:03.159126Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.159217Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.160230Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.160707Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.165159Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:09:03.166716Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:09:03.226062Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.227071Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.230521Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:09:03.231498Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.232579Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.235817Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:09:03.240794Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.241663Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.244937Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:09:03.306235Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.307300Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.310568Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:09:03.371758Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.372831Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.376858Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:09:03.537998Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.539244Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.543517Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:09:03.604351Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.605420Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.609131Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:09:03.638174Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.639399Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.642664Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:03.703821Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.704827Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.708183Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:03.769397Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.770386Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.774023Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:09:03.835089Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.836341Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.839983Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:04.051625Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.051746Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.052781Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.053452Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.058444Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:09:04.518952Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.520209Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.524127Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:09:04.635194Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.636380Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.640351Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:04.701362Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.702443Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.705554Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:09:04.767312Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.768305Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.770716Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.771628Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.771917Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:09:04.774589Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:04.803847Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.804813Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.805319Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.807939Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.808525Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:09:04.811770Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:09:04.840837Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.841617Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.844870Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:04.849422Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.849497Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.850325Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.850877Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.854433Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:09:04.856085Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:09:04.915421Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.915511Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.916367Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.916719Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.920115Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:09:04.921276Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:04.981359Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.982142Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.985320Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:09:05.046546Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.047403Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.050958Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:05.068871Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:09:05.079967Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.080061Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.080851Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.081267Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.085473Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:09:05.085913Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.086811Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:09:05.087191Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.090257Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:09:05.119708Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.119791Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.119829Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.120552Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.120918Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.121639Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.126412Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:09:05.128375Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:09:05.130008Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:09:05.139484Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.140170Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.143198Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:09:05.172296Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.173442Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.173856Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.176635Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.177186Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:05.177580Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.180414Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.181226Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:09:05.183500Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:09:05.184660Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.185319Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.188558Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:05.217724Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.217804Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.218462Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219041Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.223033Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:09:05.223466Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:09:05.684832Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.685751Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.690596Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:09:05.901426Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.902191Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.905870Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:06.267899Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.268748Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.272477Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:09:06.333433Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.334302Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.338816Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:06.500229Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.501091Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.504427Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:09:06.565556Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.566447Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.570272Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:06.631316Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.632087Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.635892Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:09:06.697176Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.697294Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.698031Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.698455Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.701928Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:09:06.703624Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:09:06.730858Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.731573Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.735029Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:09:06.739678Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.739748Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.740296Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.740793Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.744595Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:09:06.745799Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:06.806132Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.806266Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.806972Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.807489Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.811344Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:09:06.812878Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:06.840112Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.840977Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.843487Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.844210Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.846206Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:09:06.847622Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:09:06.908794Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.908903Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.909524Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.909951Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.913327Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:09:06.914306Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:06.974465Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.974561Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.975173Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.975733Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.979887Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:06.981339Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:09:07.040974Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.041083Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.041719Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.042129Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.045602Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:07.047161Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:07.107203Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.107331Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.107963Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.108363Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.111702Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:07.112826Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:07.172886Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.172975Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.638470Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.639044Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.642328Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:07.643044Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.643908Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.644185Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.646354Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.647896Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:07.648892Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:07.678706Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.680260Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.687993Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.053103Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.053701Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.057557Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:08.118399Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.182636Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.183295Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.186767Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:08.247628Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.562593Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.563095Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.566444Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:09:08.627363Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.627672Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.627822Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.628116Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.629001Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.632274Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:08.634808Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:08.636405Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:08.662278Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.662360Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.662610Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.663018Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.666395Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:08.667201Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:08.667308Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.699032Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.699095Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.699272Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.702362Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:08.731179Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:11.804461Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:20.121652Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:20.121652Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] 
[2026-06-04T17:09:20.121652Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:20.121774Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] 
[2026-06-04T17:09:20.121784Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:20.121792Z] [nf-63ea9894ce27829370069fa15089461d-1c9e0-t7wvb] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec