Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2bc6a550b9b7a6a7c04a8c46d11f24/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/d15fc6d2cf86ed4e809c1f8a92aa19/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/d15fc6d2cf86ed4e809c1f8a92aa19/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-p3bw_rq_ because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:14:34,695 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:14:35,535 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:14:35,703 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:14:36,604 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:14:36,764 - cnv_pipe.batch.run_model - INFO - Processing cluster 1163 with 197 probes
2026-06-04 17:14:37,150 - cnv_pipe.batch.run_model.cluster1163 - INFO - Child process started for cluster 1163 with 197 probes
2026-06-04 17:15:36,788 - cnv_pipe.batch.run_model.cluster1163 - INFO - Child process finished cluster 1163. Wrote cluster_1163_samples.csv and cluster_1163_params.csv
2026-06-04 17:15:36,790 - cnv_pipe.batch.run_model - INFO - Cluster 1163 finished in 60.03 seconds. Status: SUCCESS