cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119917628, elapsed 0.0s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 3301
progress 10% @chr2:19993111, elapsed 0.1s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 13331
progress 15% @chr2:189036616, elapsed 0.1s, est remaining 0.6s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 1583
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 12052
progress 25% @chr4:88417425, elapsed 0.2s, est remaining 0.5s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 22315
progress 30% @chr5:146878002, elapsed 0.2s, est remaining 0.4s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 32352
progress 35% @chr6:127475293, elapsed 0.2s, est remaining 0.4s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 42311
progress 40% @chr7:128794348, elapsed 0.2s, est remaining 0.4s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 51790
progress 45% @chr9:2039466, elapsed 0.3s, est remaining 0.3s, peak mem 275MB, user 0.0s, sys 0.0s, output queue size 61164
progress 50% @chr10:32462683, elapsed 0.3s, est remaining 0.3s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 71096
progress 55% @chr11:48216810, elapsed 0.3s, est remaining 0.3s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 81565
progress 60% @chr12:21925942, elapsed 0.4s, est remaining 0.2s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 91114
progress 65% @chr13:49203157, elapsed 0.4s, est remaining 0.2s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 102164
progress 70% @chr15:42684116, elapsed 0.4s, est remaining 0.2s, peak mem 296MB, user 0.0s, sys 0.0s, output queue size 112207
progress 75% @chr16:30946730, elapsed 0.5s, est remaining 0.2s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 5956
progress 80% @chr17:42554402, elapsed 0.5s, est remaining 0.1s, peak mem 302MB, user 0.0s, sys 0.0s, output queue size 16653
progress 85% @chr19:5679345, elapsed 0.5s, est remaining 0.1s, peak mem 335MB, user 0.0s, sys 0.1s, output queue size 27063
progress 90% @chr19:55788807, elapsed 0.5s, est remaining 0.1s, peak mem 338MB, user 0.0s, sys 0.1s, output queue size 36559
progress 95% @chr22:37001837, elapsed 1.0s, est remaining 0.1s, peak mem 2420MB, user 5.7s, sys 4.4s, output queue size 3220
progress 100% @chrY:57128403, elapsed 1.0s, est remaining 0.0s, peak mem 2420MB, user 5.8s, sys 4.4s, output queue size 22
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395352
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.584 user 0.162 sys 2.234 real
done: 1 calls 0.288 user 0.140 sys 0.430 real
execute: 1 calls 0.014 user 0.001 sys 1.053 real
fetch_reads: 208647 calls 0.065 user 0.000 sys 0.166 real
fetch_ref: 2042 calls 0.012 user 0.024 sys 0.035 real
fetch_vcf: 2042 calls 0.771 user 0.061 sys 0.931 real
idle: 92 calls 0.002 user 0.003 sys 31.672 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.020 user 4.136 sys 8.618 real
overall: 2537930752 mem 8.756 user 19.460 sys 2.424 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory