Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/81a258529538e679122468d23ff1b0/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/267147e0763efecc786be207442dbe/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/267147e0763efecc786be207442dbe/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/81a258529538e679122468d23ff1b0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF88XIK/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF88XIK/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF88XIK/chr6_138229684-138229952.bed.gz.tbi
[2026-06-04T17:08:58.639217Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:58.639965Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:58.639973Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:58.639978Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:58.639982Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXF88XIK'
[2026-06-04T17:08:58.639986Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:58.639991Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:58.639995Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:58.639999Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:08:58.640002Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:58.640006Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:58.640009Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:58.640013Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:58.640017Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:58.640874Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:58.640980Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:58.647028Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:58.647970Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:58.648185Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:58.648464Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:58.648790Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.649373Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.649519Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.649630Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.649812Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.649993Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.650592Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.650714Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.650876Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.651100Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.651262Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.652085Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.652478Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.653945Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.655595Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.655858Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:58.656396Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.656800Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.656932Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657000Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657226Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657299Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657417Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657487Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657603Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657667Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657786Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.657889Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658216Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658502Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658620Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658689Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658818Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658881Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.658995Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659061Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659173Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659243Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659354Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659418Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.659646Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660015Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660133Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660197Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660305Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660367Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660484Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660599Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660717Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660782Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660887Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.660954Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.661166Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.661639Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.661768Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.661831Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.661944Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662010Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662118Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662184Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662301Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662363Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662480Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662549Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.662779Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663281Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663403Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663464Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663576Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663643Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663752Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663820Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663924Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.663990Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.665453Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.665692Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666314Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666389Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666508Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666574Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666686Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666748Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666863Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.666927Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.667033Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.667102Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.667215Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.667327Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.667633Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668265Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668383Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668453Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668567Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668632Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668750Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668812Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.668974Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.669035Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.669160Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.669233Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.669627Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670324Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670442Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670507Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670616Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670683Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670789Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670858Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.670970Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.671033Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.673794Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.674622Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.674896Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.674963Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.688617Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.689517Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.689724Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.689992Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.691048Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.691218Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.691432Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.691779Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.692133Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.692263Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.692710Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.693379Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.693517Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.693803Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:58.694635Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.695841Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.699006Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.700058Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:08:58.700516Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.703434Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.704411Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:08:58.708857Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:08:58.712961Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:08:58.716089Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:08:58.720143Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:08:58.723161Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:08:58.726052Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:08:59.691817Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.693043Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.696586Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:08:59.807722Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.808826Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.812631Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:08:59.841345Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.842645Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.845592Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:08:59.906883Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.908098Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.911501Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:08:59.940582Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.941884Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.945458Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:09:00.056577Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.057804Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.061299Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:09:00.172755Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.173990Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.177477Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:09:00.238602Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.239788Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.242997Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:09:00.454893Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.456086Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.459402Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-04T17:09:00.520427Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.521821Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.525434Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:09:00.586620Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.587785Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.591326Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:00.652367Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.653512Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.657376Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:00.768313Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.769544Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.773362Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:00.985047Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.986235Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.989644Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:09:01.151091Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.152280Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.155857Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:09:01.317257Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.318382Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.322145Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:01.533403Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.534478Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.537900Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:09:01.599158Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.600276Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603625Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:01.664997Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.666135Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.669845Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-04T17:09:01.730563Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.731732Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.734905Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-04T17:09:01.796085Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.797185Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.800454Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:01.861811Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.862903Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.866360Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:01.895466Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.896555Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.899737Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-04T17:09:01.904660Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.905586Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.908425Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-04T17:09:01.937860Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.937934Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.938834Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.939143Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.941849Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.943852Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:01.945270Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.945844Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:01.948771Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:09:01.961918Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.962847Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.965893Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-04T17:09:01.979337Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.980217Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.983390Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:09:02.012629Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.012702Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.013583Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.014035Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.017020Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-04T17:09:02.018031Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:02.078398Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.078496Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.079411Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.079867Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.083282Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:02.084717Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:09:02.144602Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.144699Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.145644Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.146220Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.150364Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:02.152075Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-04T17:09:02.179165Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.180185Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.184002Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:09:02.196457Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.197384Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.201144Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:09:02.362211Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.363217Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.366521Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:02.578387Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.579442Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.583179Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:02.644050Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.645063Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.648459Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:09:02.860233Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.861306Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.865182Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-04T17:09:02.925900Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.926912Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.930608Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:09:03.041950Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.042976Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.046217Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:03.107484Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.108441Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.112140Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:03.173027Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.173119Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.174027Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.174404Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.177800Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:03.178971Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:09:03.240796Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.240868Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.241875Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.242183Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.245525Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-04T17:09:03.246577Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:09:03.306796Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.306895Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.307775Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.308135Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.312100Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:09:03.345391Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-04T17:09:03.374065Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.374155Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.374995Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.375559Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.379114Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:03.380351Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:09:03.440246Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.440354Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.441198Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.441768Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.445667Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:09:03.506780Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.507675Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.510974Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-04T17:09:03.515998Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.516765Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.519525Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-04T17:09:03.548749Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.548931Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.549864Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.550120Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.550446Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.553481Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-04T17:09:03.555401Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.557096Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:09:03.558059Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:09:03.619744Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619835Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620637Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620976Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.624213Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:03.625435Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:09:03.653309Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.653994Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.657040Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:09:03.718475Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.719337Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.723299Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-04T17:09:03.783412Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.784278Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.788074Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:09:03.848892Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.849797Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.853470Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:09:04.065002Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.065113Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.065913Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.066282Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.069679Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-04T17:09:04.103241Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:09:04.130788Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.130904Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.131743Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.132485Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.136241Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:04.398125Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.398931Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.402788Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:09:04.513562Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.513660Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.514342Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.514660Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.518438Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:09:04.519643Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:09:04.579260Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.580069Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.583447Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:09:04.801605Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:09:04.845335Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.845443Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.846169Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.848291Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.850098Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:09:04.851309Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-04T17:09:04.880858Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.881701Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.884544Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-04T17:09:04.885645Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.886251Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.889989Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:09:04.918496Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.919181Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.922965Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:09:04.951484Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.952164Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.955352Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:09:04.984206Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.984870Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.988243Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:05.017165Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.017778Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.020587Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:09:05.049652Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.050300Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.053304Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:05.066453Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.067069Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.070020Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:05.083380Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.083979Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.086707Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-04T17:09:05.099956Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.100570Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.104067Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-04T17:09:05.132722Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.133353Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.136782Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:09:05.141559Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.142146Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.144859Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:09:05.174376Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.174944Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.177674Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:09:05.239189Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.239833Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.243675Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:09:05.304078Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.304728Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.307689Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-04T17:09:05.336785Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.336869Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.337832Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.338306Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.339954Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.341014Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-04T17:09:05.342538Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.344262Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:09:05.345888Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:05.375119Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.375700Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.378801Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-04T17:09:05.379449Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.379937Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.382673Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-04T17:09:05.395731Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.396264Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.399491Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:05.428157Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428225Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428717Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429045Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.432404Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:09:05.432936Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.433527Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.437146Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:09:05.472337Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-04T17:09:05.498227Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.498312Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.612608Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.613078Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.616031Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-04T17:09:05.677344Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.693406Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.693879Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.696687Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-04T17:09:05.758164Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.996751Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:09:06.022632Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.022702Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.023131Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.023916Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.026861Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-04T17:09:06.028045Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:06.057520Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.057590Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.221837Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.222292Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.224913Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:09:06.254174Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.518647Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.519141Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.522631Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-04T17:09:06.583733Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.584140Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.584302Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.584658Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.584984Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.591062Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.592533Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.593343Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:06.649306Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.649381Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.649403Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.649596Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.650001Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.653400Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.653793Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.682808Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.682871Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.683030Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.685783Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:06.715022Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.285451Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:17.528716Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:17.528716Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] 
[2026-06-04T17:09:17.528716Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:17.528849Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] 
[2026-06-04T17:09:17.528856Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:17.528864Z] [nf-2d81a258529538e679122468d23ff1b0-ae238-5llrb] [614_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec