[2026-06-04T17:09:01.589501Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:01.590217Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:01.590230Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:01.590234Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:01.590238Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJm95yE'
[2026-06-04T17:09:01.590242Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:01.590249Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:01.590252Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:01.590256Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:09:01.590260Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:01.590281Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:01.590285Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:01.590289Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:01.590296Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:01.590786Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:01.590915Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:01.596743Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:01.597441Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:01.597672Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:01.598034Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:01.598273Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.598705Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.598800Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.598876Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599013Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599094Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599219Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599285Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599686Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.599729Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.600046Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.600920Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.601231Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.602845Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603215Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:01.603473Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603608Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603679Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603798Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.603864Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604048Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604115Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604234Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604305Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604415Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604507Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.604857Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605180Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605492Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605559Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605669Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605762Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605882Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.605944Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606060Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606126Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606237Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606305Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606447Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.606674Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607088Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607160Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607276Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607348Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607458Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607522Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607639Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607707Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607881Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.607950Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.608069Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.608188Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.608508Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.608904Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.609097Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.609547Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610067Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610137Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610247Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610342Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610453Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610519Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610632Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610694Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610801Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.610901Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.611035Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.611427Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.612757Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.612867Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.613136Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.613627Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.613746Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.613811Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.615171Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.615754Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.615888Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.615961Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616078Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616145Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616261Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616328Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616440Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616512Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616632Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616699Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.616899Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617519Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617631Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617697Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617808Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617872Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.617979Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.618042Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.618150Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.618215Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.618327Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.618388Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.634825Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.635448Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.635560Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.635795Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.636818Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.636970Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.637062Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.637180Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.637256Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.637619Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.637970Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.638084Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:01.638499Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.638706Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:01.639505Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.640270Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.641634Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.642808Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.644965Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.645498Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:09:01.650294Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:09:01.655998Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:09:01.657262Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:09:01.659349Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:09:01.662131Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:01.663192Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:01.777188Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.777252Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.778081Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.778397Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.781491Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:09:02.143951Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:02.193343Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.193430Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.194396Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.194752Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.198366Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:09:02.199098Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:09:02.259722Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.261234Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.264349Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:09:02.293502Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.294767Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.297322Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:09:02.302500Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.303783Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.306374Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:09:02.335699Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.336876Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.339701Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:09:02.551459Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.552789Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.555630Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:02.616990Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.618257Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.620959Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:09:02.832579Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.833813Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.836536Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:09:02.865723Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.867029Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.869616Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:09:02.905625Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:09:02.931059Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.931143Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.932050Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.932371Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.935666Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:09:02.936146Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:02.964381Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.965210Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.967861Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:09:02.997139Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.997964Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.000553Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:09:03.029977Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.030803Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.033936Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:03.094864Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.095783Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.098377Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:03.111810Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.112680Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.115307Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:09:03.176770Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.177653Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.180430Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:09:03.442079Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.443055Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.445625Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:09:03.474869Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.475732Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.478318Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:09:03.740336Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.741337Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.744254Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:03.773322Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.774251Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.777220Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:09:03.782093Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.782915Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.785360Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:09:03.815012Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.815853Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.818236Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:09:03.879877Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.880727Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.883285Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:09:03.912574Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.912662Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.913444Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.913757Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.916542Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:09:03.917511Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:09:03.978642Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.978717Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.979490Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.979843Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.983041Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:09:03.984109Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:09:04.012243Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.013019Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.015593Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:04.044925Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.045634Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.047969Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:09:04.077395Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.078158Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.080596Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:04.142083Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.142896Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.145329Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:09:04.174884Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.175739Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.178497Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:04.207972Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.208793Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.211594Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:04.272984Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.273770Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.276595Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:04.305846Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.306610Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.309590Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:04.370917Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.372260Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.375944Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:09:04.487580Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.488378Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.491138Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:09:04.520334Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.521137Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.523817Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:09:04.553012Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.553693Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.556609Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:09:04.818588Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.819493Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.822249Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:09:04.851386Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.852152Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.854915Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:04.966403Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.967249Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.969737Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:09:04.999148Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.000096Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.001782Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.002613Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.003023Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:09:05.005347Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:05.066670Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.067509Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.070207Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:05.099451Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.099534Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.100200Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.100600Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.104028Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:09:05.104659Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:09:05.132805Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.133521Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.136228Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:09:05.197923Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.198678Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.201806Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:09:05.262810Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.263565Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.266673Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:05.327918Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.328656Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.331517Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:09:05.360919Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.361683Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.364381Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:05.393632Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.394277Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.396954Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:09:05.426226Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.426863Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429745Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:09:05.434565Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.435153Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.437824Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:05.599775Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.600512Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.603529Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:09:05.632541Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.633220Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.636297Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:05.697154Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.697819Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.700726Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:06.162741Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.163477Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.166235Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:09:06.227605Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.228265Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.230960Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:09:06.260245Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.260963Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.263955Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:09:06.675839Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.676507Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.679454Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:09:06.708481Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.709164Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.712312Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:06.773388Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.774058Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.776689Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:09:06.805860Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.806468Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.809177Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:09:06.838594Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.839286Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.842176Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:09:06.871259Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.871878Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.874468Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:06.936180Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.936855Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.939585Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:06.944453Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.944915Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.947567Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:09:06.976864Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.976953Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.977505Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.977763Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.980571Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:09:06.981277Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:06.993647Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.994183Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.996649Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:09:07.009978Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.010050Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.010551Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.010871Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.013805Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:09:07.014395Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:09:07.026732Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.027272Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.029915Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:07.042974Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.043071Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.043560Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.043824Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.046668Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:07.047863Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:09:07.059732Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.060223Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.062694Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:07.092064Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.092597Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.095434Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:09:07.096160Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.128120Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.292418Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.292508Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.292970Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.293242Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.296137Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:07.297110Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:09:07.325135Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.325213Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.489431Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.489940Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.492878Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:09:07.522126Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.636265Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.636781Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.639379Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:09:07.700734Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.015660Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.016177Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.018697Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:09:08.048026Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.964733Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.965236Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.967876Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:09:13.997246Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.997529Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.997648Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.998269Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:13.998534Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.001743Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:14.003103Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:14.003914Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:14.030763Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.030824Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.030844Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.031048Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.031354Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.033901Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:14.034408Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:14.063729Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.063785Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.063952Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.066038Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:14.095765Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:20.562944Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:34.709683Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:34.709683Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] 
[2026-06-04T17:09:34.709683Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:34.709768Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] 
[2026-06-04T17:09:34.709776Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:34.709784Z] [nf-f37e8cb0465b67e457c59fe79f03b463-7a235-rxltn] [581_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec