File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/e6a0439b0425666f912a4733170769/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXt3KEn7/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXt3KEn7/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXt3KEn7/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:08:59.544019Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:59.545135Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:59.545148Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:59.545154Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:59.545160Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXt3KEn7'
[2026-06-04T17:08:59.545166Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:59.545176Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:59.545182Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:59.545187Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:08:59.545193Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:59.545199Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:59.545203Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:59.545209Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:59.545216Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:59.546102Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:59.546251Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:59.552307Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:59.552979Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:59.553234Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:59.553459Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:59.553691Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554112Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554209Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554333Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554467Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554553Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.554846Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.555168Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.555273Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.555734Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.556194Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.558005Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.558622Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.558854Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:59.559019Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559101Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559220Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559290Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559406Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559468Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559685Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.559950Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560252Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560323Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560435Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560500Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560619Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560684Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560797Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560869Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.560999Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.561105Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.561223Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.561287Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.561399Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.561650Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562230Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562300Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562412Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562477Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562591Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562660Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562772Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.562840Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.563806Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564160Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564350Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564458Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564645Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564711Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564823Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564889Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.565019Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.565090Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.565468Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.565884Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566008Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566079Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566191Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566257Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566371Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566434Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566549Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566614Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566723Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.566793Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.582777Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583190Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583267Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583452Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583527Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583625Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583695Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583818Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.583893Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.585729Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.585983Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:59.586857Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.587375Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.587990Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.588811Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.589843Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.590673Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.591994Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593329Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.600032Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:08:59.603956Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:08:59.608149Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:08:59.612468Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:08:59.615765Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:08:59.621236Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:08:59.621693Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:08:59.625424Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:08:59.686392Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.686474Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.686514Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.687295Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.687632Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.688413Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.694834Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:08:59.698939Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:08:59.699253Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.699544Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:08:59.700334Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.703119Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:09:00.616321Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.617227Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.620543Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:09:01.033073Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.033953Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.037104Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:09:01.148569Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.149452Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.152520Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:09:01.165403Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.166141Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.168844Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:09:01.198399Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.199255Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.201370Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.202178Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.202621Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:01.205536Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:09:01.467302Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.468371Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.471635Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:09:01.476819Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.478026Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.481234Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:09:01.510506Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.511547Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.514825Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:09:01.515445Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.516465Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.519372Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:09:01.580540Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.581486Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.584926Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:09:01.896357Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.897393Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.900480Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:09:02.212394Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.213550Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.216945Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:09:02.328490Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.329499Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.333845Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:09:02.394508Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.395363Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.398424Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:09:02.660186Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.661201Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.664928Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:09:02.725983Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.727241Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.730602Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:09:02.791973Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.792920Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.797011Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:09:02.857988Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.858925Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.862086Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:09:03.073737Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.073840Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.074829Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075276Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.079973Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:09:03.081269Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:09:03.140853Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.140957Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.141997Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.142466Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.146054Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:09:03.147205Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:09:03.175390Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.176239Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.179140Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:09:03.179995Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.180761Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.183680Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:09:03.244911Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.245835Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.249548Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:09:03.254221Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.255098Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.257943Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:09:03.319230Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.320031Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.323096Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:09:03.484693Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.485371Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.488919Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:09:03.549778Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.550620Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.554232Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:09:03.615542Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616394Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619914Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:09:03.781129Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.781895Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.785206Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:09:03.896339Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.897115Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.900055Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:09:03.961258Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.962017Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.965341Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:09:04.026158Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.026263Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.026930Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.027298Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.031620Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:09:04.032498Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:09:04.060263Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.061000Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.064919Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:09:04.426228Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.426827Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.430253Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:09:04.491530Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.492163Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.495820Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:09:04.556946Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.557510Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.560727Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:09:04.672221Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.672796Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.675922Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:09:04.737272Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.737820Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.740779Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:09:04.802042Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.802659Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.805703Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:09:04.867176Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.867755Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.871049Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:04.932523Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.933099Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.936614Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:09:04.998091Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.998195Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.998689Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.999005Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.002263Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:09:05.003258Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:09:05.063490Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.063599Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.428555Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.429050Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.431794Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:09:05.493350Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.808397Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.808915Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.812176Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:09:05.873186Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.937324Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.937819Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.940659Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:09:06.001904Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.002003Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.002452Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.005589Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:09:06.066856Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.682294Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.682801Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.685964Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:09:06.747218Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.961844Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.962338Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.965709Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:09:07.026475Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.026733Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.026882Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.027213Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.027576Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.031814Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:07.033654Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:07.035151Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:07.062793Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.062881Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.062907Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.063171Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.063529Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.066788Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:07.067750Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:07.128251Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.128344Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.128578Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.131437Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:07.160975Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.181720Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:18.433904Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:18.433904Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] 
[2026-06-04T17:09:18.433904Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:18.434001Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] 
[2026-06-04T17:09:18.434009Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:18.434017Z] [nf-98e6a0439b0425666f912a4733170769-75231-d9f5q] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec