cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:183000001, elapsed 0.3s, est remaining 5.5s, peak mem 407MB, user 0.4s, sys 6.7s, output queue size 66
progress 10% @chr2:65000001, elapsed 0.5s, est remaining 4.9s, peak mem 698MB, user 1.0s, sys 14.0s, output queue size 41
progress 15% @chr2:223000001, elapsed 0.8s, est remaining 4.5s, peak mem 890MB, user 1.4s, sys 21.3s, output queue size 32
progress 20% @chr3:178000001, elapsed 1.0s, est remaining 4.1s, peak mem 983MB, user 1.8s, sys 28.6s, output queue size 19
progress 25% @chr4:105000001, elapsed 1.3s, est remaining 3.8s, peak mem 1115MB, user 2.3s, sys 35.7s, output queue size 31
progress 30% @chr5:109000001, elapsed 1.5s, est remaining 3.6s, peak mem 1280MB, user 2.7s, sys 42.8s, output queue size 29
progress 35% @chr6:33000001, elapsed 1.8s, est remaining 3.3s, peak mem 1397MB, user 3.3s, sys 50.3s, output queue size 33
progress 40% @chr7:49000001, elapsed 2.0s, est remaining 3.1s, peak mem 1562MB, user 3.7s, sys 57.9s, output queue size 22
progress 45% @chr8:67000001, elapsed 2.3s, est remaining 2.8s, peak mem 1718MB, user 4.2s, sys 65.7s, output queue size 15
progress 50% @chr9:86000001, elapsed 2.6s, est remaining 2.6s, peak mem 1832MB, user 4.7s, sys 73.7s, output queue size 6
progress 55% @chr10:91000001, elapsed 2.9s, est remaining 2.3s, peak mem 1907MB, user 5.1s, sys 81.7s, output queue size 19
progress 60% @chr11:119000001, elapsed 3.1s, est remaining 2.1s, peak mem 1955MB, user 5.4s, sys 89.3s, output queue size 18
progress 65% @chr13:14000001, elapsed 3.4s, est remaining 1.8s, peak mem 2027MB, user 5.8s, sys 96.9s, output queue size 14
progress 70% @chr14:71000001, elapsed 3.6s, est remaining 1.6s, peak mem 2084MB, user 6.2s, sys 104.5s, output queue size 15
progress 75% @chr16:4000001, elapsed 3.9s, est remaining 1.3s, peak mem 2120MB, user 6.5s, sys 112.2s, output queue size 21
progress 80% @chr17:81000001, elapsed 4.1s, est remaining 1.0s, peak mem 2192MB, user 6.8s, sys 119.9s, output queue size 21
progress 85% @chr20:30000001, elapsed 4.4s, est remaining 0.8s, peak mem 2240MB, user 7.1s, sys 127.7s, output queue size 5
progress 90% @chrX:42000001, elapsed 4.9s, est remaining 0.5s, peak mem 2732MB, user 11.3s, sys 130.7s, output queue size 114
progress 95% @chrY:51000001, elapsed 5.1s, est remaining 0.3s, peak mem 2753MB, user 14.5s, sys 132.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 8.8s, est remaining 0.0s, peak mem 2759MB, user 32.7s, sys 134.3s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047063
output file size: 93248822
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.015 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.019 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.793 user 17.376 sys 18.720 real
done: 1 calls 0.323 user 0.828 sys 1.152 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.008 user 0.000 sys 8.931 real
fetch: 3219323 calls 0.214 user 16.832 sys 15.795 real
fetch_reads: 3219322 calls 0.331 user 16.903 sys 15.890 real
fetch_ref: 13004 calls 0.060 user 0.050 sys 0.089 real
fetch_vcf: 13004 calls 1.478 user 0.269 sys 1.857 real
idle: 2000 calls 1.747 user 0.292 sys 162.442 real
init: 1 calls 0.002 user 0.000 sys 0.025 real
update: 13229 calls 8.943 user 0.937 sys 11.053 real
write: 3219323 calls 13.762 user 16.903 sys 30.600 real
overall: 2893144064 mem 38.854 user 135.905 sys 11.235 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.020 user 0.000 sys 0.028 real
done: 1 calls 0.060 user 0.000 sys 0.058 real
idle: 61 calls 0.002 user 0.000 sys 31.321 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81944576 mem 0.091 user 0.022 sys 1.057 real