File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/da384bed484fa473eebd910b082f38/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX47wVqx/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX47wVqx/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX47wVqx/chr4_22420786-22421189.bed.gz.tbi
[2026-06-04T17:08:54.311982Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:54.313163Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:54.313176Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:54.313181Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:54.313186Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX47wVqx'
[2026-06-04T17:08:54.313190Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:54.313195Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:54.313199Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:54.313203Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:08:54.313207Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:54.313210Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:54.313214Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:54.313218Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:54.313222Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:54.313749Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:54.313866Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:54.319952Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:54.320770Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:54.320978Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:54.321290Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:54.321696Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322213Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322308Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322381Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322503Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322572Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322696Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322762Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.322945Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.323339Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.323742Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.324018Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.324095Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.324417Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.324674Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.324841Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.325106Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.325349Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.325495Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.327338Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.327861Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:54.327939Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328278Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328509Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328625Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328691Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328811Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328878Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.328990Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.329058Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.329185Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.329266Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.329471Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.329556Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330014Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330214Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330325Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330390Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330513Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330577Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330691Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330751Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330861Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.330926Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.331031Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.331093Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.331210Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.331368Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.331994Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332069Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332177Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332253Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332369Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332432Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332543Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332606Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332715Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332780Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.332885Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.333123Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.333741Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.333806Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.333919Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.333981Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334090Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334163Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334273Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334336Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334445Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334513Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334662Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.334742Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.335006Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.335631Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.336861Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.337553Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.337687Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.337759Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.337873Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.337938Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338050Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338113Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338229Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338292Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338402Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338470Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.338796Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339388Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339505Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339569Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339684Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339752Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339857Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.339924Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.340040Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.340101Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.359267Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.359538Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.359722Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.359999Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.360914Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.361328Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.361823Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.361946Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.362367Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.362851Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.363363Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.364389Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.364983Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.365254Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.365866Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.366583Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.366794Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:54.369244Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.370396Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:08:54.371081Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.374920Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:08:54.379170Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:08:54.382237Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:08:54.385355Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:08:54.387652Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:08:54.391218Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:08:54.392568Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:08:55.207982Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.208076Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.209088Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.209493Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.213865Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:08:55.214842Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:08:55.775526Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.776595Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.780142Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:08:55.891325Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.892537Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.896355Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:08:55.925333Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.926389Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.929659Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-04T17:08:55.991041Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.992215Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.995295Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-04T17:08:56.056532Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.057676Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.061177Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:08:56.222643Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.222752Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.223778Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.224336Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.227780Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-04T17:08:56.229637Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-04T17:08:56.289305Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.289392Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.290391Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.290797Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.294595Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-04T17:08:56.295735Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:08:56.308734Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.309728Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.313650Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:08:56.342021Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.342988Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.346712Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:08:56.507858Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.508883Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.512864Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:08:56.573611Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.574625Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.578095Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-04T17:08:56.638861Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.639856Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.643943Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:08:56.955272Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.956329Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.959431Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:08:57.022193Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.023170Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.026835Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-04T17:08:57.087682Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.088697Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.092372Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:08:57.303636Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.303728Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.304606Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.304961Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.309360Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:08:57.310145Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:08:57.338947Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.339910Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.343136Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-04T17:08:57.404450Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.404557Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.405506Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.405943Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.409824Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:08:57.411276Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-04T17:08:57.470857Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.470967Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.471969Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.472345Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.476540Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-04T17:08:57.477495Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-04T17:08:57.537402Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.537514Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.538428Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.538978Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.542728Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-04T17:08:57.544357Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:08:57.603734Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.604704Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.608017Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:08:57.719504Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.720437Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.724270Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:08:57.753035Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.753993Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.757841Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-04T17:08:57.818802Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.819714Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.823492Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:08:58.035053Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.035953Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.039599Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:08:58.301246Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.302253Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.305785Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-04T17:08:58.366601Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.367485Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.371066Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:08:58.432100Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.432983Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.436504Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:08:58.497536Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.498399Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.502089Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-04T17:08:58.530660Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.531623Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.535568Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:08:58.548072Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.548826Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.552622Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:08:58.581444Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.582356Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.585881Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:08:58.586552Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.587315Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.590192Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:08:58.651573Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.651662Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.652468Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.652840Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.656288Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-04T17:08:58.657381Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:08:58.717380Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.718247Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.721877Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:08:58.782981Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.783847Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.787464Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:08:59.150046Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.150885Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.155213Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:08:59.617218Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.617988Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.621258Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-04T17:08:59.682508Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.683330Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.686901Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-04T17:08:59.699969Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.700715Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.704057Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-04T17:08:59.717034Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.717800Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.720793Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-04T17:08:59.725596Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.726278Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.729471Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:08:59.758449Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.758535Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.759209Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.759792Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.763610Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:08:59.764510Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:08:59.792954Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.793730Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.797209Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:08:59.858233Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.859009Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.862519Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:08:59.891549Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.892257Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.895488Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-04T17:08:59.908210Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.908861Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.912088Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-04T17:08:59.941154Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.941251Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.941922Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.942305Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.945995Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-04T17:08:59.946584Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.947227Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.947691Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:08:59.950269Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:08:59.979320Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.980002Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.983244Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:00.012408Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.013021Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.016470Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:00.077399Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.078125Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.081583Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:09:00.142434Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.143151Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.146501Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-04T17:09:00.208760Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.208879Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.209514Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.209917Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.213351Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:09:00.214576Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:09:00.274745Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.274822Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.274860Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.275466Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.275789Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.277724Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.278902Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:09:00.281576Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:09:00.282859Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:09:00.310461Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.311116Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.313933Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:09:00.314808Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.315274Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.319026Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:09:00.347366Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.348025Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.351162Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:00.351994Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.352547Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.355412Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:09:00.384550Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.385213Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.388171Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:00.600069Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.600775Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.604293Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:09:00.665609Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.666253Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.670158Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:00.670511Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.671124Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.674548Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-04T17:09:00.735885Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.736503Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.740072Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:01.252710Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.253306Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.257240Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-04T17:09:01.318027Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.318707Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.322335Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-04T17:09:01.383317Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.383436Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.383990Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.387324Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-04T17:09:01.448413Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.448516Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.449049Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.452734Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:09:01.513535Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.513618Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.514163Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.517218Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:09:01.578523Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.793112Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.793629Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.796840Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:09:01.858011Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.072799Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.073388Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.076804Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-04T17:09:02.137933Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.252304Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.252866Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.256024Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-04T17:09:02.285007Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.349206Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.349735Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.352873Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-04T17:09:02.413912Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.414252Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.414417Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.415126Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.415847Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.420071Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.421535Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.422668Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:02.448893Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.449214Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.452051Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.457332Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.457395Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.457614Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.460032Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.489605Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.489685Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.489899Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.492602Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:02.521786Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.941884Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:13.201714Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:13.201714Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] 
[2026-06-04T17:09:13.201714Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:13.201818Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] 
[2026-06-04T17:09:13.201829Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:13.201836Z] [nf-06da384bed484fa473eebd910b082f38-54e72-s99mm] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec