cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144259911, elapsed 0.1s, est remaining 1.5s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2123
progress 10% @chr9:36930833, elapsed 0.1s, est remaining 1.2s, peak mem 78MB, user 0.0s, sys 0.3s, output queue size 935
progress 15% @chr9:96758778, elapsed 0.2s, est remaining 1.1s, peak mem 78MB, user 0.1s, sys 0.4s, output queue size 2716
progress 20% @chr9:128941445, elapsed 0.3s, est remaining 1.1s, peak mem 93MB, user 0.1s, sys 0.5s, output queue size 5337
progress 25% @chr10:14908408, elapsed 0.3s, est remaining 1.0s, peak mem 93MB, user 0.1s, sys 0.7s, output queue size 8088
progress 30% @chr10:69207793, elapsed 0.4s, est remaining 0.9s, peak mem 99MB, user 0.2s, sys 0.8s, output queue size 10476
progress 35% @chr10:100507908, elapsed 0.4s, est remaining 0.8s, peak mem 114MB, user 0.2s, sys 0.9s, output queue size 13133
progress 40% @chr11:320565, elapsed 0.5s, est remaining 0.8s, peak mem 126MB, user 0.3s, sys 1.0s, output queue size 15715
progress 45% @chr11:17988597, elapsed 0.6s, est remaining 0.7s, peak mem 129MB, user 0.3s, sys 1.1s, output queue size 17870
progress 50% @chr11:61420470, elapsed 0.6s, est remaining 0.6s, peak mem 132MB, user 0.3s, sys 1.3s, output queue size 20234
progress 55% @chr11:73272198, elapsed 0.7s, est remaining 0.5s, peak mem 141MB, user 0.4s, sys 1.4s, output queue size 22908
progress 60% @chr11:114440656, elapsed 0.7s, est remaining 0.5s, peak mem 150MB, user 0.4s, sys 1.5s, output queue size 25192
progress 65% @chr12:6492271, elapsed 0.8s, est remaining 0.4s, peak mem 156MB, user 0.5s, sys 1.6s, output queue size 27561
progress 70% @chr12:31697740, elapsed 0.8s, est remaining 0.4s, peak mem 162MB, user 0.5s, sys 1.7s, output queue size 815
progress 75% @chr12:56002543, elapsed 0.9s, est remaining 0.3s, peak mem 174MB, user 0.5s, sys 1.9s, output queue size 3298
progress 80% @chr12:100058029, elapsed 1.0s, est remaining 0.2s, peak mem 180MB, user 0.6s, sys 2.0s, output queue size 6022
progress 85% @chr12:123783947, elapsed 1.0s, est remaining 0.2s, peak mem 192MB, user 0.6s, sys 2.2s, output queue size 8877
progress 90% @chr13:48463709, elapsed 1.1s, est remaining 0.1s, peak mem 195MB, user 0.6s, sys 2.3s, output queue size 11243
progress 95% @chr14:22775444, elapsed 1.2s, est remaining 0.1s, peak mem 204MB, user 0.7s, sys 2.4s, output queue size 13509
progress 100% @chr14:64119427, elapsed 1.2s, est remaining 0.0s, peak mem 213MB, user 0.7s, sys 2.6s, output queue size 16052
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586803
output file size: 22310
reads: 1001133
contig: 48642 intervals 9000010 bases
"assemble": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_addRead": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_buildGraph": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_computecigar": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_calcsize": 2 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_clear": 3 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_prepare": 4 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_build_threading": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op1": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op2": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 1 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_create": 1 calls 0.000 user 0.000 sys 0.000 real
"checkGraph": 1 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 1 calls 0.000 user 0.000 sys 0.000 real
active: 98785 calls 0.001 user 0.003 sys 0.018 real
advance: 50143 calls 0.000 user 0.001 sys 0.023 real
assemble_region: 1 calls 0.000 user 0.000 sys 0.000 real
calc: 98785 calls 0.001 user 0.000 sys 0.018 real
clip_region: 1 calls 0.000 user 0.000 sys 0.000 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.002 sys 2.140 real
fetch: 98785 calls 0.000 user 0.000 sys 0.018 real
fetch_ref: 98786 calls 0.024 user 0.013 sys 0.364 real
fetch_region: 1 calls 0.000 user 0.000 sys 0.000 real
idle: 39 calls 0.003 user 0.001 sys 23.605 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 98785 calls 0.000 user 0.001 sys 0.020 real
tracker: 98785 calls 0.007 user 0.001 sys 0.090 real
trim_region: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 223481856 mem 1.022 user 3.798 sys 3.253 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory