File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/1d4c2419b1bb325081ca775858cdd1/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T17:09:05.191301Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:05.192701Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:05.192715Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:05.192720Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:05.192725Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOu8t1l'
[2026-06-04T17:09:05.192729Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:05.192734Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:05.192737Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:05.192746Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:09:05.192749Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:05.192753Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:05.192757Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:05.192760Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:05.192764Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:05.193618Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:05.193828Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:05.200837Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:05.201858Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:05.202146Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:05.202632Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:05.203068Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.203942Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.204043Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.204122Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.204342Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.204893Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.205693Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.205976Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.206836Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.208979Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.209322Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.209560Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.209632Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.209752Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.209961Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:05.210366Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.210880Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.211165Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.211625Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.211975Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.212664Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.213002Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.213532Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.213882Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.214590Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.214982Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215415Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215490Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215603Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215671Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215782Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.215863Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.216074Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.216350Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.216939Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.217344Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.217699Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.218193Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.218912Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.218988Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219111Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219179Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219293Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219359Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219470Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219536Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219651Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219794Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.219913Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.220397Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221091Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221172Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221289Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221405Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221526Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221592Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221711Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221816Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221927Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.221995Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.222306Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.222567Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.223263Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.223676Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240091Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240440Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240521Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240728Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240801Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240888Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.240958Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.241063Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.241137Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:05.241191Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:05.242925Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.243690Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.246157Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.246880Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.247942Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.249416Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.252046Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.252828Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:05.253686Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.255095Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.261539Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:05.262073Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:05.267223Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:05.269958Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:05.272675Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:05.272841Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:05.275670Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:05.372456Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.372554Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.373379Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.373856Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.381452Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:05.384493Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:05.492074Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.493066Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.496855Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:05.557628Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.558521Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.562688Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:05.773991Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.774913Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.778954Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:05.839829Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.840655Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.844832Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:05.849259Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.850058Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.853666Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:05.914612Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.915459Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.919183Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:05.980344Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.980442Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.981256Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.981596Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.984938Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:05.985729Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:06.046182Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.046277Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.047038Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.047397Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.054009Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:06.054456Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:06.113222Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.114120Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.117871Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:06.379626Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.380446Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.383763Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:06.645465Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.646442Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.649971Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:06.861861Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.862721Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.866841Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:07.078055Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.078909Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.082660Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:07.143839Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.144813Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.148188Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:07.177320Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.178444Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.178902Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.180110Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.183036Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:07.184258Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:07.196249Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.196882Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.199721Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:07.213037Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.213662Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.216546Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:07.245728Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.246421Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.249997Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:07.254919Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.254989Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.255590Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.256090Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.259618Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:07.260579Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:07.289969Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.290036Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.290616Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.291374Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.294765Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:07.295564Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:07.323831Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.324540Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.327367Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:07.356383Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.357031Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.360352Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:07.421336Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.422071Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.426080Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:07.486532Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.487279Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.491494Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:07.552606Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.553302Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.556586Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:07.617597Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.617670Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.618303Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.618905Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.622183Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:07.623349Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:07.652866Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.653443Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.657321Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:07.661686Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.661745Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.662262Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.662904Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.668262Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:07.669706Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:07.696454Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.697072Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.700216Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:07.705040Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.705596Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.708853Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:07.737996Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.738087Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.738611Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.739259Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.743731Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:07.744290Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:07.804732Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.804841Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.805408Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.805824Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.809509Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:07.810635Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:07.870486Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.870557Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.870591Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.871099Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.873394Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.874137Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.874980Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:07.878743Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:07.879824Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:07.941697Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.941801Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.941827Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.942393Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.942916Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.943859Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.946782Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:07.951388Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:07.952693Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:07.980130Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.980252Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.980759Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.981505Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.984437Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.985081Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:07.987090Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.988434Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:08.019164Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.026725Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.090673Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.091120Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.094351Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:08.155619Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.370087Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.370558Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.374112Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:08.434906Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.699643Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.700070Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.703518Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:08.764598Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.978931Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.979366Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.982724Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:09.043785Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.044067Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.044253Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.044672Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.045314Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.050841Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:09.052661Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:09.053935Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:09.077686Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.077750Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.077984Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.078400Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.082265Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:09.083399Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:09.086884Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.118594Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.118670Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.118879Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.121853Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:09.183382Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:10.850324Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:15.729365Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:15.729365Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] 
[2026-06-04T17:09:15.729365Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:15.729466Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] 
[2026-06-04T17:09:15.729473Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:15.729481Z] [nf-d31d4c2419b1bb325081ca775858cdd1-b3b63-5dsdb] [599_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec