File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/99c34bc4eb48a95b0f88943b74cb8a/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-04T17:08:59.582587Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:59.583924Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:59.583951Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:59.583956Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:59.583960Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXTtGEoW'
[2026-06-04T17:08:59.583964Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:59.583970Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:59.583974Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:59.583977Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-04T17:08:59.583981Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:59.583985Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:59.583988Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:59.583992Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:59.583996Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:59.585064Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:59.585144Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:59.591150Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:59.591817Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:59.592059Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:59.592343Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:59.592632Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593320Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593415Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593490Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593609Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593679Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593801Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.593870Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.594262Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.594516Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.594580Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.595029Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.595292Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.595727Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.596076Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.596328Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.596401Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.596633Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.598572Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.598775Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:59.599467Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.599597Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.599777Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.599875Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.600032Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.600116Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.600809Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.601064Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.601363Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.601783Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.602298Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.602441Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.602658Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.602768Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.602951Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.603053Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.603226Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.603449Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604027Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604174Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604366Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604460Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604593Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604660Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604772Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.604838Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605152Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605530Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605649Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605715Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605823Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605888Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.605998Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606116Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606234Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606295Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606408Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606484Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.606896Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.607254Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.607371Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.607433Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.607544Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.607610Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622101Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622196Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622264Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622413Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622483Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622565Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622633Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622738Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622805Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:59.622852Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:59.627846Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.628390Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.629974Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.630807Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.631108Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:08:59.631772Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.632248Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.633144Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.634203Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.635280Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.639723Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:08:59.645187Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:08:59.648115Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:08:59.648829Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:08:59.657345Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:08:59.657950Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:08:59.658558Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:08:59.756481Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.757410Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.761429Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:00.123097Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.123217Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.124041Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.124504Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.128509Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:00.129887Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:00.190973Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.191081Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.191818Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.192086Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.201689Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:00.203545Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:00.232657Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.233450Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.237174Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:00.298064Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.298864Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.302089Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:00.363398Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.364269Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.368111Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:00.429178Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.430407Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.431211Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.433594Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.435582Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:00.437075Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:00.498055Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.498177Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.498856Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.500946Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.502709Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:00.503667Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:00.565837Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.565924Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.566538Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.567122Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.570866Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:00.571723Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:00.782929Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.783720Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.787133Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:00.848331Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.849050Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.852693Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:00.913546Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.914310Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.918252Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:00.930868Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.931514Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.934959Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:00.947738Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.948375Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.951619Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:00.964953Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.965528Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.969005Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:01.029902Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.029990Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.030601Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.031307Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.035196Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:01.246328Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.247060Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.250360Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:01.311748Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.312382Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.315435Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:01.376636Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.377259Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.380764Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:01.385227Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.385830Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.388883Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:01.450308Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.450906Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.453691Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:01.515175Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.515789Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.519385Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:01.580290Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.580926Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.584300Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:01.643766Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:01.645428Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.645503Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.645527Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.646070Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.646647Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.647291Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.650151Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:01.651935Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:01.653102Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:01.657748Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.658280Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.661148Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:01.690539Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.690626Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.690649Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.691133Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.691876Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.692160Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.695487Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:01.696257Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:01.696559Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.698390Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.700195Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:01.701548Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:01.730986Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.731067Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.731524Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.732214Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.735194Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:01.735830Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.736260Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.736720Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:01.739177Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:01.768501Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.768995Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.771850Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:01.801270Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.801741Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.804739Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:01.817801Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.818271Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.820782Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:01.834400Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.834821Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.837606Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:01.866934Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.867020Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.867443Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.868029Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.871491Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:01.872285Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:01.932327Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.932810Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.935925Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:01.997195Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.997677Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.000561Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:02.001730Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.002146Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.004989Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:02.034480Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.036084Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.250340Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.250829Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.254080Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:02.284269Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.498614Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.498704Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.499143Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.499822Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.502649Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:02.503781Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:02.533329Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.533821Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.535890Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.536001Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.536544Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:02.600074Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.714331Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.714774Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.718676Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:02.779435Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.779515Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.779894Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.783161Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:02.844248Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.844508Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.844656Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.845391Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.846079Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.849889Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:02.851242Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.852048Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.879396Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.879469Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.879664Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.882238Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.883628Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.883872Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.886097Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.915680Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.915748Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.915926Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.918439Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:02.949096Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.267452Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:10.143749Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:10.143749Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] 
[2026-06-04T17:09:10.143749Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:10.143823Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] 
[2026-06-04T17:09:10.143829Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:10.143835Z] [nf-7099c34bc4eb48a95b0f88943b74cb8a-a26c7-hbsn4] [601_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec