File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4fbf3267803fb7ec7138daae3aad39/.command.log
Size
1.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (germline_control_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4fbf3267803fb7ec7138daae3aad39/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/c3b5b67b68a7170cf95f036711335c/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4fbf3267803fb7ec7138daae3aad39/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b80a0cf4bcbbb324fd792196d1e3d5/germline_control_2.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/c3b5b67b68a7170cf95f036711335c/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b80a0cf4bcbbb324fd792196d1e3d5/germline_control_2.dv_rescue.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   394 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_2.dv_only_sites.vcf.gz