cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 4776
progress 10% @chr2:19973563, elapsed 0.1s, est remaining 0.9s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 2209
progress 15% @chr2:189039272, elapsed 0.1s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 12608
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 23072
progress 25% @chr4:88408524, elapsed 0.2s, est remaining 0.7s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 33337
progress 30% @chr5:146218985, elapsed 0.3s, est remaining 0.7s, peak mem 169MB, user 0.0s, sys 0.0s, output queue size 43377
progress 35% @chr6:127475293, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 702
progress 40% @chr7:128811800, elapsed 0.4s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 10185
progress 45% @chr9:841839, elapsed 0.4s, est remaining 0.5s, peak mem 334MB, user 0.0s, sys 0.0s, output queue size 19562
progress 50% @chr10:32022020, elapsed 0.5s, est remaining 0.5s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 29492
progress 55% @chr11:48245104, elapsed 0.5s, est remaining 0.4s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 39953
progress 60% @chr12:21580342, elapsed 0.5s, est remaining 0.4s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 49507
progress 65% @chr13:48411389, elapsed 0.6s, est remaining 0.3s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 60557
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.3s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 70590
progress 75% @chr16:30946730, elapsed 0.7s, est remaining 0.2s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 80157
progress 80% @chr17:42562612, elapsed 0.7s, est remaining 0.2s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 90846
progress 85% @chr19:5648989, elapsed 0.8s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 101255
progress 90% @chr19:55761801, elapsed 0.8s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 110759
progress 95% @chr22:36937342, elapsed 1.2s, est remaining 0.1s, peak mem 2476MB, user 6.2s, sys 2.3s, output queue size 3222
progress 100% @chrY:25038809, elapsed 1.2s, est remaining 0.0s, peak mem 2476MB, user 6.3s, sys 2.3s, output queue size 5626
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813900
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.807 user 0.093 sys 2.160 real
done: 1 calls 0.286 user 0.119 sys 0.415 real
execute: 1 calls 0.011 user 0.000 sys 1.239 real
fetch_reads: 208647 calls 0.096 user 0.000 sys 0.158 real
fetch_ref: 2048 calls 0.022 user 0.007 sys 0.028 real
fetch_vcf: 2048 calls 0.647 user 0.033 sys 0.912 real
idle: 92 calls 0.003 user 0.001 sys 31.783 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.216 user 2.168 sys 6.838 real
overall: 2597109760 mem 10.018 user 10.933 sys 2.613 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory