File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8b61ef0cce0d2409d238ac333a04a7/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T17:09:03.600145Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:03.601224Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:03.601242Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:03.601247Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:03.601252Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXtsKame'
[2026-06-04T17:09:03.601256Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:03.601260Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:03.601264Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:03.601267Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:09:03.601271Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:03.601275Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:03.601278Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:03.601282Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:03.601285Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:03.601912Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:03.601999Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:03.607641Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:03.608268Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:03.608896Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:03.609175Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:03.609335Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.609725Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.610294Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.610507Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.610714Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.611099Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.612675Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.613174Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.613278Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.613488Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.613610Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:03.613811Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.613962Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614026Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614137Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614201Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614383Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614656Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.614809Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615058Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615252Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615325Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615438Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615505Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615615Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615675Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615789Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615850Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.615960Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616024Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616153Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616258Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616672Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616736Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616849Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.616916Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617024Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617085Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617195Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617256Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617368Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617457Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617594Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.617724Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618520Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618585Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618692Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618804Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618919Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.618982Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619088Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619185Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619634Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619696Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619806Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619864Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.619975Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620040Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620144Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620208Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620316Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620375Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620486Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620548Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.620749Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.621314Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.621426Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.621486Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.635764Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.636007Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.636076Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.636232Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.636298Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.636383Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.637420Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.637696Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.638253Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.638308Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:03.639534Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.640842Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.641480Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.641848Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.642354Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.643092Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.643900Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.644552Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.646806Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.647344Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:09:03.653713Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:03.654380Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:09:03.657632Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:09:03.660064Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:09:03.661459Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:03.663368Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:09:03.665376Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:09:03.763908Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.763997Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.764096Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.764782Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.765532Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.767678Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.769952Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:09:03.771085Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:09:03.773763Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:09:04.336000Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.336826Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.339947Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:09:04.552616Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.553453Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.556741Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:09:05.018881Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.019627Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.022535Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:09:05.134020Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.134826Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.137852Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:09:05.166904Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.167768Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.170634Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:05.231883Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.231960Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.232651Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.233003Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.235585Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:05.236431Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:09:05.298210Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.298283Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.298318Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.298963Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.299500Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.300942Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.301513Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:05.303853Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:05.304826Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:09:05.334617Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.335250Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.337571Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:09:05.399340Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.400006Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.403162Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:09:05.464266Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.464968Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.467836Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:09:05.679531Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.680280Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.683389Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:09:05.744375Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.745059Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.748224Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:05.777654Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.778291Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.781193Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:09:06.042729Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.043526Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.046851Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:06.059567Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.060230Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.063173Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:09:06.092186Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.092765Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.095393Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:09:06.124771Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.125450Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.127898Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:09:06.157261Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.157365Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.157945Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.158543Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.161518Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:09:06.162527Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:09:06.222884Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.223615Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.226393Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:09:06.488505Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.489168Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.491799Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:09:06.553616Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.554347Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.557078Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:09:06.618758Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.618868Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.619488Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.619985Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.622586Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:09:06.623413Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:09:06.654396Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.654479Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.655042Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.656862Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.657781Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:09:06.660292Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:09:06.689680Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.690615Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.690898Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.691809Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.694404Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:09:06.695275Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:09:06.724552Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.724614Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.725126Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.725360Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.728111Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:09:06.729182Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:09:07.090076Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.090709Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.093673Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:07.122999Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.123543Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.126224Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:09:07.187960Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.188039Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.188566Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.190325Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.191655Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:09:07.192680Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:07.223387Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.224137Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.227078Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:09:07.240005Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.240519Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.243145Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:09:07.272537Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.273284Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.276083Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:09:07.277171Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.277656Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.280381Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:07.310837Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.311311Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.314346Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:09:07.526142Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.526759Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.529620Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:09:07.591045Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.591603Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.594710Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:07.655994Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.656551Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.659392Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:07.721037Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.721614Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.724798Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:07.886208Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.886798Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.889676Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:09:07.919164Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.919255Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.919865Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.920379Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.924225Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:09:07.924827Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:09:07.954526Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.219155Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.219654Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.222544Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:09:08.251699Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.365845Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.366336Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.368863Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:09:08.399519Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.513651Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.514123Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.516788Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:09:08.546236Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610344Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610904Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.613382Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:09:08.642671Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.674450Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.674833Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.677467Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:08.706736Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.870744Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.871122Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.873699Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:08.904618Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.219201Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.219601Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.222503Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:09:09.283944Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.284172Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.284295Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.286042Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.286543Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.286684Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:09.289414Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:09.290461Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:09.318843Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.318916Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.318947Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.319166Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.320803Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.322640Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:09.323672Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:09.352830Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.352894Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.353086Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.355150Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:09.384911Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:14.207386Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:22.489661Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:22.489661Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] 
[2026-06-04T17:09:22.489661Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:22.489717Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] 
[2026-06-04T17:09:22.489724Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:22.489731Z] [nf-d18b61ef0cce0d2409d238ac333a04a7-a2934-lmnm6] [579_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec