cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:45000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 0.1s, sys 2.6s, output queue size 59
progress 10% @chr1:205000001, elapsed 0.1s, est remaining 0.9s, peak mem 418MB, user 0.4s, sys 8.1s, output queue size 210
progress 15% @chr3:4000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.9s, sys 14.1s, output queue size 370
progress 20% @chr4:29000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 1.4s, sys 20.0s, output queue size 485
progress 25% @chr4:158000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 2.0s, sys 25.3s, output queue size 646
progress 30% @chr5:38000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 2.7s, sys 30.5s, output queue size 327
progress 35% @chr6:55000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 3.3s, sys 35.8s, output queue size 487
progress 40% @chr7:118000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 3.7s, sys 40.9s, output queue size 649
progress 45% @chr6:158000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 4.0s, sys 46.2s, output queue size 811
progress 50% @chr9:136000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 4.5s, sys 51.6s, output queue size 972
progress 55% @chr10:90000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 5.0s, sys 57.1s, output queue size 1133
progress 60% @chr11:125000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 5.4s, sys 62.4s, output queue size 1295
progress 65% @chr13:39000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 5.9s, sys 67.7s, output queue size 1457
progress 70% @chr14:67000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 6.4s, sys 73.2s, output queue size 1619
progress 75% @chr16:3000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 7.0s, sys 78.9s, output queue size 1781
progress 80% @chr17:74000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 7.5s, sys 84.2s, output queue size 1943
progress 85% @chr20:58000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 8.1s, sys 89.4s, output queue size 2105
progress 90% @chrX:6000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 8.4s, sys 91.9s, output queue size 2267
progress 95% @chrX:107000001, elapsed 0.7s, est remaining 0.0s, peak mem 418MB, user 8.7s, sys 96.3s, output queue size 2618
progress 100% @HLA-C*03:03:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 9.0s, sys 108.6s, output queue size 5852
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.010 real
"predict_filter": 171 calls 0.000 user 0.000 sys 0.007 real
advance: 3219322 calls 0.687 user 41.963 sys 52.159 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.002 sys 0.829 real
fetch_ref: 460 calls 0.000 user 0.000 sys 0.007 real
idle: 20057 calls 0.641 user 0.556 sys 343.874 real
init: 1 calls 0.199 user 0.108 sys 0.753 real
overall: 439123968 mem 10.497 user 112.604 sys 2.677 real