cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119919268, elapsed 0.0s, est remaining 0.9s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 1933
progress 10% @chr2:19936219, elapsed 0.1s, est remaining 0.8s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 11970
progress 15% @chr2:189042720, elapsed 0.1s, est remaining 0.8s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 4082
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 14547
progress 25% @chr4:88404876, elapsed 0.2s, est remaining 0.7s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 24810
progress 30% @chr5:146223403, elapsed 0.3s, est remaining 0.6s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 34848
progress 35% @chr6:127286616, elapsed 0.3s, est remaining 0.6s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 44797
progress 40% @chr7:128812708, elapsed 0.3s, est remaining 0.5s, peak mem 157MB, user 0.0s, sys 0.0s, output queue size 54285
progress 45% @chr9:841839, elapsed 0.4s, est remaining 0.5s, peak mem 277MB, user 0.0s, sys 0.0s, output queue size 7260
progress 50% @chr10:32292496, elapsed 0.4s, est remaining 0.4s, peak mem 286MB, user 0.0s, sys 0.0s, output queue size 17208
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 27673
progress 60% @chr12:21912872, elapsed 0.5s, est remaining 0.3s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 37222
progress 65% @chr13:49267490, elapsed 0.6s, est remaining 0.3s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 48273
progress 70% @chr15:42719473, elapsed 0.6s, est remaining 0.3s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 58307
progress 75% @chr16:30930073, elapsed 0.6s, est remaining 0.2s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 67873
progress 80% @chr17:42543028, elapsed 0.7s, est remaining 0.2s, peak mem 295MB, user 0.0s, sys 0.0s, output queue size 78562
progress 85% @chr19:5641740, elapsed 0.7s, est remaining 0.1s, peak mem 322MB, user 0.0s, sys 0.1s, output queue size 88974
progress 90% @chr19:55731999, elapsed 0.8s, est remaining 0.1s, peak mem 322MB, user 0.0s, sys 0.1s, output queue size 98475
progress 95% @chr22:36937342, elapsed 1.2s, est remaining 0.1s, peak mem 2491MB, user 6.9s, sys 2.6s, output queue size 3223
progress 100% @chrY:57084632, elapsed 1.2s, est remaining 0.0s, peak mem 2491MB, user 7.1s, sys 2.6s, output queue size 6707
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290599
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.899 user 0.058 sys 2.363 real
done: 1 calls 0.267 user 0.101 sys 0.376 real
execute: 1 calls 0.006 user 0.001 sys 1.241 real
fetch_reads: 208647 calls 0.114 user 0.001 sys 0.186 real
fetch_ref: 2072 calls 0.003 user 0.011 sys 0.023 real
fetch_vcf: 2072 calls 0.938 user 0.043 sys 1.026 real
idle: 92 calls 0.004 user 0.000 sys 31.786 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 5.019 user 2.424 sys 8.047 real
overall: 2612379648 mem 11.651 user 14.514 sys 2.643 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory