Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2bc6a550b9b7a6a7c04a8c46d11f24/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/4ca861025b2f4db6b0601212fbe8b8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/9cd8e38dfd956c86aae7e3acd3e26f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/9cd8e38dfd956c86aae7e3acd3e26f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-081fqhxs because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:13:23,261 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:13:24,102 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:13:24,270 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:13:25,195 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:13:25,351 - cnv_pipe.batch.run_model - INFO - Processing cluster 823 with 193 probes
2026-06-04 17:13:25,724 - cnv_pipe.batch.run_model.cluster823 - INFO - Child process started for cluster 823 with 193 probes
2026-06-04 17:14:21,546 - cnv_pipe.batch.run_model.cluster823 - INFO - Child process finished cluster 823. Wrote cluster_823_samples.csv and cluster_823_params.csv
2026-06-04 17:14:21,548 - cnv_pipe.batch.run_model - INFO - Cluster 823 finished in 56.20 seconds. Status: SUCCESS