Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/a8ea218f0249870d5ab1de3b720ef3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/267147e0763efecc786be207442dbe/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/267147e0763efecc786be207442dbe/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/a8ea218f0249870d5ab1de3b720ef3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:08:58.017665Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:58.019400Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:58.019431Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:58.019437Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:58.019442Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXEweXo7'
[2026-06-04T17:08:58.019446Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:58.019452Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:58.019474Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:58.019484Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:08:58.019496Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:58.019507Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:58.019520Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:58.019533Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:58.019539Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:58.020564Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:58.020680Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:58.026861Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:58.027579Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:58.027800Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:58.028029Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:58.028310Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.028757Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.028952Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029049Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029181Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029256Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029380Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029446Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029571Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029635Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029752Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029818Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.029930Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.030190Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.030707Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.030838Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.031026Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.031327Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.031759Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.034691Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.035528Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.035643Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:58.036172Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036250Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036366Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036428Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036550Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036614Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036722Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036788Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036898Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.036996Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.037275Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.037544Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.037925Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.037993Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038108Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038176Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038289Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038356Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038471Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038537Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038647Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.038712Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.039286Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.039499Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.040176Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.040605Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.040729Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.040801Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.040913Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041028Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041147Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041211Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041323Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041388Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041505Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041603Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.041920Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042376Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042493Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042554Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042672Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042738Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042852Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.042920Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.043029Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.043091Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.060575Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.060869Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.061082Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.061328Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.061663Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.062352Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.062470Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.062705Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.064350Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.064749Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.065125Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.066042Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:58.066155Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.066460Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:58.067294Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.068188Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.069251Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.070123Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.072072Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.075114Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:08:58.079170Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:08:58.085347Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:58.088431Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:08:58.090418Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:58.091072Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:08:58.096315Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:08:58.098002Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:08:58.211266Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.212006Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.215867Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:08:58.728106Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.729038Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.733220Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:08:58.794598Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.795456Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.799407Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:08:58.860349Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.860437Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861215Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.861560Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.865136Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:08:58.866042Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:08:58.894009Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.894838Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.897846Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:08:59.410812Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.411900Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.415330Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:08:59.476487Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.477584Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.481253Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:59.542228Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.543540Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.547055Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:08:59.858959Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.860067Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.863665Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:09:00.225705Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.226435Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.229767Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:09:00.290873Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.291677Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.295381Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:09:00.406413Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.407182Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.410859Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:09:00.439396Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.440066Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.443448Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:09:00.472307Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.472386Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.472963Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.473373Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.476938Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:09:00.481969Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.482651Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.485772Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:09:00.512825Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:09:00.514621Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.514733Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.515418Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.515791Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.519185Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:09:00.520898Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.521744Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:09:00.521858Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.525184Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:09:00.553938Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.554770Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.558340Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:09:00.619347Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.620135Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.624014Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:00.684746Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.685539Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.688687Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:09:01.101160Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.101832Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.105241Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:09:01.166436Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.167211Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.170651Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:09:01.232016Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.232803Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.236633Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:09:01.398061Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.398719Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.402173Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:09:01.714015Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.715049Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.718431Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:09:01.779636Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.780385Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.783756Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:01.895124Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.895831Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.899361Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:09:01.960216Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.960921Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.964575Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:09:02.276252Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.276982Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.280790Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:09:02.293468Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.294164Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.297704Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:09:02.326502Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.327199Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.330799Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:02.343624Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.344335Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.348530Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:02.459146Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.459873Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.463490Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:09:02.524493Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.525212Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.529013Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:09:02.589868Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.589973Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.590580Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.590922Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.594626Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:09:02.596028Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:09:02.655556Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.655663Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.656293Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.656839Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.660538Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:09:02.662244Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:02.721497Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.721591Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.722190Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.722530Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.726487Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:09:02.727689Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:09:02.787600Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.788244Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.791733Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:02.852810Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.853615Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.857641Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:09:03.169330Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.169918Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.173250Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:03.234569Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.235224Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.238766Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:09:03.299871Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.299990Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.300535Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.300863Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.304707Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:09:03.305861Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:09:03.365765Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.366466Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.370110Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:09:03.431280Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.431911Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.435396Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:09:03.496513Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.497112Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501153Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:09:03.505480Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.505940Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.509094Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:09:03.538179Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.554315Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.869340Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.869890Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.873591Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:09:03.934477Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.199569Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.200155Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.203582Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:09:04.264816Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.529965Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.530488Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.534061Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:09:04.595099Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.709839Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.710434Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.715526Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:09:04.776372Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.141845Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.142380Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.145747Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:09:05.206816Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.973081Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.973592Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.976654Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:09:06.005865Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.006160Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.006323Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.006627Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.007233Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.011766Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.012980Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:06.014752Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.040148Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.040460Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.043230Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.044060Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.044296Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.044560Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.047845Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.077033Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.077113Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.077335Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.080355Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:06.109647Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.629965Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:16.908694Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:16.908694Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] 
[2026-06-04T17:09:16.908694Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:16.908784Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] 
[2026-06-04T17:09:16.908791Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:16.908799Z] [nf-9da8ea218f0249870d5ab1de3b720ef3-fac41-89rlh] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec