Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ff6eaa758c6f025b001c9e7a9f6eb5/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/aa7579f3ac5f3ce76e6f58fc960fb0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ff6eaa758c6f025b001c9e7a9f6eb5/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/aa7579f3ac5f3ce76e6f58fc960fb0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:08:54.384703Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:54.385650Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:54.385664Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:54.385668Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:54.385673Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6H2IGa'
[2026-06-04T17:08:54.385677Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:54.385682Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:54.385686Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:54.385690Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:08:54.385693Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:54.385697Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:54.385701Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:54.385705Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:54.385708Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:54.386164Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:54.386274Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:54.392292Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:54.392999Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:54.393257Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:54.393528Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:54.393781Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394088Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394192Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394278Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394409Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394492Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394627Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394706Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394836Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.394914Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.395193Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.395588Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.395805Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.396074Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.396743Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.397444Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.399277Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.400163Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:54.400617Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.401058Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.401613Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.401723Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.401895Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.401976Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.402091Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.402153Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.402270Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.402346Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.402647Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403017Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403133Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403204Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403341Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403404Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403520Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403584Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403694Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403756Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403867Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.403937Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.404093Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.404289Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.404764Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.404831Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405296Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405360Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405475Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405543Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405709Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.405789Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.406212Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.406686Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.406808Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.406871Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.406982Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407043Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407203Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407274Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407385Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407451Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407563Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.407629Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.408112Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.408709Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.408881Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.408958Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.409075Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.409155Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.425164Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.425281Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.425354Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.425777Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.426340Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.426639Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.428077Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.428397Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.428597Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.428766Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:54.429518Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:54.429645Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.430239Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.430958Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.432035Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.433089Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.434252Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.435533Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.436715Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.440007Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:08:54.445599Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:08:54.451391Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:08:54.458665Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:08:54.458962Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:08:54.459169Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:08:54.527583Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:08:54.572100Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.572178Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.572834Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.573216Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.579718Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:08:54.581991Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:08:54.993552Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.994425Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.997814Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:08:55.259429Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.260346Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.264245Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:08:55.325170Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.326061Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.329110Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:08:55.390218Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.391035Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.395089Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:08:56.457967Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:08:56.458464Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.459340Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.459636Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.462491Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.464076Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:08:56.465865Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:08:56.526908Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.527826Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.531277Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:08:56.892901Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.893659Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.896699Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:08:56.925993Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.926770Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.929618Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:08:56.934545Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.935241Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.938057Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:56.951142Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.951955Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.954810Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:56.967954Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.968635Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:56.972395Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:08:57.000778Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.001603Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.005176Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:08:57.033726Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.034535Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.036697Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.037490Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.038018Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:08:57.040935Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:08:57.101808Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.101912Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.102778Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.103050Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.106686Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:08:57.139626Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:08:57.167907Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.167995Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.168634Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.169187Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.172598Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:08:57.173876Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:08:57.185345Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.186039Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.188945Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:08:57.218091Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.218823Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.222272Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:08:57.282982Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.283737Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.287035Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:08:57.699319Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.700051Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.703820Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:08:57.764593Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.765291Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.769110Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:08:57.829554Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.829669Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.830304Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.830796Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.835138Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:08:57.836284Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:08:57.896263Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.896343Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.896954Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.897299Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.901510Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:08:57.902455Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:08:57.962428Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.962547Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.963159Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.963639Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:57.967580Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:08:57.969071Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:08:58.078676Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.079341Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.082679Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:08:58.143557Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.144167Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.146841Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:08:58.208230Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.208846Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.212650Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:08:58.273395Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.274013Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.277335Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:08:58.338327Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.338929Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.341986Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:08:58.403057Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.403648Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.407330Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:08:58.468063Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.468666Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.472055Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:08:58.583176Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.583797Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.587207Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:08:58.648019Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.648610Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:58.652104Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:08:59.013844Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.014494Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.018330Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:08:59.079060Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.079730Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.083166Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:08:59.144138Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.144911Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.148583Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:08:59.359902Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.360551Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.363954Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:08:59.364745Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.365257Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.367789Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:08:59.429386Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.429476Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.429969Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.430399Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.434239Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:08:59.435256Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:08:59.495366Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.496136Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.497007Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.499084Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.499759Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:08:59.502550Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:08:59.563701Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.563810Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564308Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.564656Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.568500Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:08:59.569403Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:08:59.597184Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.597872Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.600619Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:08:59.605861Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.637834Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.802115Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.802606Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:59.806497Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:08:59.867182Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.031683Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.032184Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.035069Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:09:00.096445Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.411152Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.411657Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.414698Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:09:00.476355Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.891614Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.892128Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.895779Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:09:00.956919Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.171760Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.172309Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:01.176176Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:09:01.237055Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.002642Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.003256Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.006729Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:09:02.068220Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.068531Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.068706Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.069223Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.070077Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.075596Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.077579Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:02.079022Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:02.102789Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.102863Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.103090Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.103518Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.107568Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.108991Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:02.112071Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.143830Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.143907Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.144127Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:02.147352Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:02.176567Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.996460Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:13.274153Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:13.274153Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] 
[2026-06-04T17:09:13.274153Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:13.274250Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] 
[2026-06-04T17:09:13.274258Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:13.274266Z] [nf-a0aa7579f3ac5f3ce76e6f58fc960fb0-a2ce7-dnvpz] [590_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec