File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/e07ed5de95e95fa88644c75596a923/.command.log
Size
55.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/e07ed5de95e95fa88644c75596a923/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/e07ed5de95e95fa88644c75596a923/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/afbce3389bf5bcfac4e357eeed7653/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/afbce3389bf5bcfac4e357eeed7653/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:09:03.480545Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:03.481375Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:03.481386Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:03.481390Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:03.481395Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX8ILP9c'
[2026-06-04T17:09:03.481400Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:03.481405Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:03.481409Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:03.481413Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:09:03.481416Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:03.481420Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:03.481424Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:03.481427Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:03.481431Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:03.481924Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:03.482021Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:03.490086Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:03.491090Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:03.491327Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:03.491755Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:03.492026Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.492922Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.493149Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.493497Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.493635Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.493835Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.494107Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.494645Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.494967Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.496607Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.497245Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:03.497580Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.497879Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.497963Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.498091Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.498159Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.498372Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.498480Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.498909Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499183Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499383Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499451Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499561Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499628Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499743Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499805Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.499941Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.500012Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.500126Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.500195Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.500495Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.500895Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501016Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501079Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501191Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501255Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501363Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501431Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501540Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501604Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501715Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501774Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.501918Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.502203Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.502632Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.502702Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.502816Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.502932Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503046Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503111Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503219Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503284Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503390Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503451Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503565Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.503792Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.520294Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.520797Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.520876Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521041Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521117Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521203Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521274Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521381Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521452Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.521504Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:03.525655Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.526251Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.526577Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.526999Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.527417Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.528085Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.528590Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.531154Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.532160Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.540032Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:09:03.543296Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:09:03.546476Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:09:03.550972Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:09:03.552723Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:09:03.553524Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:09:03.555463Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:09:03.556786Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:09:03.651989Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.652069Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.652708Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.653078Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.658322Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:09:04.470747Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.471499Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.474771Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:09:04.535935Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.536651Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.540104Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:09:04.651391Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.652205Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.655327Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:09:05.167719Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.168499Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.172044Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:09:05.184900Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.185632Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.188529Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:09:05.249886Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.250611Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.258061Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:09:05.318454Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.319250Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.322481Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:09:05.697596Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:09:05.735075Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.735930Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.740005Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:09:06.051535Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.052294Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.055732Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:09:06.084529Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.085169Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.088575Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:09:06.199736Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.200444Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.204243Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:09:06.264698Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.265505Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.268984Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:09:06.273618Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.274214Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.277218Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:09:06.338642Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.339232Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.342681Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:09:06.371197Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.371792Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.374931Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:09:06.387877Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.388425Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.391449Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:09:06.420358Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.421353Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.421648Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.423692Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.425525Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:09:06.426820Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:09:06.455845Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.456403Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.458471Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.459111Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.459984Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:09:06.463121Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:09:06.491926Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.492002Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.492491Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.492883Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.496034Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:09:06.497209Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:09:06.557405Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.557474Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.557924Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.558292Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.561272Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:09:06.562493Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:09:06.590279Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.590776Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.593276Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:09:06.622781Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.623302Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.626146Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:09:06.687284Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.687808Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.690609Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:09:06.752062Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.752608Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.755936Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:09:06.867053Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.867560Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.871514Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:09:06.932250Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.932820Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.936508Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:09:06.997512Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.998074Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.001086Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:09:07.062681Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.063265Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.066538Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:09:07.095639Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.095753Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.096242Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.096649Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.100123Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:09:07.101257Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:09:07.161595Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.161689Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.162152Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.162693Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.166868Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:09:07.226834Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.227377Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.231316Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:09:07.235726Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.236221Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.239211Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:09:07.268236Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.268332Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.268731Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.271422Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:09:07.300678Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.565567Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.566171Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.569108Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:09:07.598575Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.913397Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.913945Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.917033Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:09:07.917604Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.917977Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.920811Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:09:07.949780Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:07.951226Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.165541Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.165983Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.168434Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:09:08.230003Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.522084Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:09:08.544811Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.544915Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.545416Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.545772Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.548704Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:09:08.549744Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:09:08.609754Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.609830Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610033Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610176Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610637Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.610968Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.616632Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:08.616849Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:08.617703Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:08.643631Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.643879Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.646647Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.647264Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:08.648026Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.648205Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.651383Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:08.680278Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.680340Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.680527Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.683272Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:08.712447Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:09.127057Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:14.003566Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:14.003566Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] 
[2026-06-04T17:09:14.003566Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:14.003664Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] 
[2026-06-04T17:09:14.003671Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:14.003678Z] [nf-31e07ed5de95e95fa88644c75596a923-d9bba-bkd4r] [596_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec