cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr1_69091-70008.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr1_69091-70008.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:18362115, elapsed 0.0s, est remaining 0.9s, peak mem 82MB, user 0.1s, sys 0.1s, output queue size 2405
progress 10% @chr1:37761367, elapsed 0.1s, est remaining 0.9s, peak mem 96MB, user 0.1s, sys 0.2s, output queue size 2574
progress 15% @chr1:65405870, elapsed 0.1s, est remaining 0.8s, peak mem 106MB, user 0.2s, sys 0.4s, output queue size 5299
progress 20% @chr1:113837590, elapsed 0.2s, est remaining 0.8s, peak mem 120MB, user 0.2s, sys 0.5s, output queue size 8063
progress 25% @chr1:155254084, elapsed 0.3s, est remaining 0.8s, peak mem 132MB, user 0.2s, sys 0.7s, output queue size 10411
progress 30% @chr1:179102287, elapsed 0.3s, est remaining 0.7s, peak mem 139MB, user 0.2s, sys 0.8s, output queue size 12880
progress 35% @chr1:210021039, elapsed 0.3s, est remaining 0.6s, peak mem 147MB, user 0.3s, sys 1.0s, output queue size 15325
progress 40% @chr1:246999348, elapsed 0.4s, est remaining 0.6s, peak mem 157MB, user 0.3s, sys 1.1s, output queue size 17714
progress 45% @chr2:32595034, elapsed 0.4s, est remaining 0.5s, peak mem 171MB, user 0.3s, sys 1.2s, output queue size 20005
progress 50% @chr2:74457334, elapsed 0.5s, est remaining 0.5s, peak mem 180MB, user 0.3s, sys 1.3s, output queue size 22492
progress 55% @chr2:113499257, elapsed 0.5s, est remaining 0.4s, peak mem 193MB, user 0.4s, sys 1.5s, output queue size 25021
progress 60% @chr2:171006147, elapsed 0.6s, est remaining 0.4s, peak mem 204MB, user 0.4s, sys 1.7s, output queue size 27720
progress 65% @chr2:202765446, elapsed 0.6s, est remaining 0.3s, peak mem 211MB, user 0.4s, sys 1.9s, output queue size 29989
progress 70% @chr2:233779359, elapsed 0.6s, est remaining 0.3s, peak mem 223MB, user 0.5s, sys 2.0s, output queue size 32468
progress 75% @chr3:25630029, elapsed 0.7s, est remaining 0.2s, peak mem 231MB, user 0.5s, sys 2.1s, output queue size 34699
progress 80% @chr3:49807736, elapsed 0.7s, est remaining 0.2s, peak mem 241MB, user 0.5s, sys 2.2s, output queue size 37165
progress 85% @chr3:101859272, elapsed 0.8s, est remaining 0.1s, peak mem 253MB, user 0.6s, sys 2.4s, output queue size 39801
progress 90% @chr3:139578872, elapsed 0.8s, est remaining 0.1s, peak mem 264MB, user 0.6s, sys 2.5s, output queue size 42397
progress 95% @chr3:187741772, elapsed 0.8s, est remaining 0.0s, peak mem 274MB, user 0.7s, sys 2.6s, output queue size 44805
progress 100% @chr4:26415475, elapsed 0.9s, est remaining 0.0s, peak mem 283MB, user 0.7s, sys 2.8s, output queue size 47042
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74586803
output file size: 22307
reads: 1001133
contig: 49651 intervals 9000373 bases
active: 100735 calls 0.001 user 0.003 sys 0.016 real
advance: 51084 calls 0.013 user 0.006 sys 0.021 real
calc: 100735 calls 0.000 user 0.009 sys 0.016 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.008 user 0.001 sys 2.100 real
fetch: 100735 calls 0.001 user 0.001 sys 0.017 real
fetch_ref: 100735 calls 0.064 user 0.038 sys 0.356 real
idle: 51 calls 0.002 user 0.004 sys 27.142 real
init: 1 calls 0.040 user 0.000 sys 0.044 real
region: 100735 calls 0.001 user 0.002 sys 0.019 real
tracker: 100735 calls 0.035 user 0.014 sys 0.090 real
overall: 300732416 mem 1.397 user 5.434 sys 3.229 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory