cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:9000001, elapsed 0.1s, est remaining 1.1s, peak mem 418MB, user 0.1s, sys 2.5s, output queue size 78
progress 10% @chr2:110000001, elapsed 0.1s, est remaining 0.9s, peak mem 418MB, user 0.3s, sys 8.8s, output queue size 239
progress 15% @chr2:233000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.6s, sys 15.1s, output queue size 341
progress 20% @chr3:175000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 0.9s, sys 20.7s, output queue size 503
progress 25% @chr3:162000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 1.3s, sys 26.4s, output queue size 664
progress 30% @chr3:187000001, elapsed 0.2s, est remaining 0.5s, peak mem 418MB, user 1.7s, sys 31.7s, output queue size 826
progress 35% @chr7:21000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 1.9s, sys 35.0s, output queue size 227
progress 40% @chr7:136000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 2.3s, sys 38.9s, output queue size 388
progress 45% @chr8:40000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 2.6s, sys 41.8s, output queue size 550
progress 50% @chr10:37000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 2.9s, sys 45.9s, output queue size 711
progress 55% @chr11:1, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 3.3s, sys 50.4s, output queue size 873
progress 60% @chr11:132000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 3.5s, sys 54.8s, output queue size 1034
progress 65% @chr12:100000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 4.1s, sys 56.5s, output queue size 1196
progress 70% @chr15:68000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 4.9s, sys 61.0s, output queue size 1358
progress 75% @chr16:24000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 5.6s, sys 66.5s, output queue size 1520
progress 80% @chr18:42000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 6.2s, sys 71.8s, output queue size 1682
progress 85% @chr20:45000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 6.7s, sys 77.0s, output queue size 1844
progress 90% @chr21:38000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 7.3s, sys 82.1s, output queue size 2006
progress 95% @chrX:98000001, elapsed 0.7s, est remaining 0.0s, peak mem 418MB, user 7.7s, sys 86.5s, output queue size 2394
progress 100% @HLA-B*47:01:01:02:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 7.9s, sys 97.2s, output queue size 5591
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.005 user 0.006 sys 0.022 real
"predict_filter": 136 calls 0.005 user 0.028 sys 0.061 real
advance: 3219322 calls 0.563 user 37.598 sys 44.856 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.011 sys 0.850 real
fetch_ref: 384 calls 0.012 user 0.054 sys 0.225 real
idle: 20057 calls 1.134 user 0.704 sys 409.510 real
init: 1 calls 0.353 user 0.269 sys 1.091 real
overall: 439111680 mem 10.320 user 101.228 sys 3.029 real