[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXw5zuHt/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXw5zuHt/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXw5zuHt/chr19_15162349-15162662.bed.gz.tbi
[2026-06-04T17:08:50.234903Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:08:50.238502Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:08:50.238525Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:08:50.238530Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:08:50.238535Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXw5zuHt'
[2026-06-04T17:08:50.238539Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:08:50.238545Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:08:50.238548Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:08:50.238552Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:08:50.238555Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:08:50.238559Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:08:50.238562Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:08:50.238566Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:08:50.238570Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:08:50.239262Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:08:50.239310Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:08:50.244880Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:08:50.245469Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:08:50.245636Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:08:50.245845Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:08:50.246093Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246420Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246508Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246579Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246696Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246763Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246882Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.246943Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.247069Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.247157Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.247437Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.247766Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.247807Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248075Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248146Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248267Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248347Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248495Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.248811Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.249259Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.249440Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.249635Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.250852Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.251171Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.251259Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:08:50.251370Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.251491Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.251902Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252013Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252079Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252190Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252253Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252367Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252430Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252541Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252603Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252709Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252773Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252879Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.252968Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.253077Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.253473Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.253763Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.253824Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.254429Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.254491Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.254599Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.254659Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.254954Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255357Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255472Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255534Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255646Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255709Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255819Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255881Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.255992Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256053Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256157Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256217Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256324Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256437Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.256938Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.257000Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.257105Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.257172Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.270652Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271164Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271234Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271444Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271515Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271601Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271664Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271770Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.271839Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:08:50.272866Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:08:50.276674Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.277273Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.277586Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.277943Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.278373Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.279916Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.280122Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:08:50.280563Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.281350Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.281964Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:50.284031Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:08:50.287211Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:08:50.288014Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:08:50.290953Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:08:50.295150Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:08:50.295357Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:08:51.359978Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:08:51.403811Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.404616Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.407793Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:08:51.469099Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.469872Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.472859Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:08:51.534303Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.535110Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.537859Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:08:51.649651Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.650430Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.653745Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:08:51.815577Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.816356Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.819719Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:08:51.848661Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.849818Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.850322Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.852607Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.852847Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:08:51.855471Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:08:51.884825Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.885507Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.888053Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:08:51.917567Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.917635Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.918233Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.918741Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.920860Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:08:51.923355Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:08:51.984706Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.985458Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:51.988436Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:08:52.001694Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.002406Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.005150Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:08:52.035828Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.036486Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.039482Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:08:52.068615Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.069323Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.072448Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:08:52.133908Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.134613Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.137752Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:08:52.166820Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.167478Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.170569Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:08:52.582645Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.582734Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.583389Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.583913Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.587475Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:08:52.588533Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:08:52.849291Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.849962Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.853034Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:08:52.882358Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.883033Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.885594Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:08:52.915373Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.916030Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.918829Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:08:52.980794Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.981399Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:52.984905Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:08:53.046234Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.046873Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.049689Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:08:53.111057Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.111697Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.114765Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:08:53.225813Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.226468Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.229095Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:08:53.258626Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.259180Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.261541Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:08:53.291331Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.291891Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.294472Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:08:53.355782Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.356380Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.358927Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:08:53.388196Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.388722Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.391703Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:08:53.453226Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.453825Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.456433Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:08:53.617994Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.618605Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.621228Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:08:53.650803Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.651351Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.653945Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:08:53.966125Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.966741Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.969339Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:08:53.998764Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:53.999288Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.002626Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:08:54.031865Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.032497Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.035310Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:08:54.064611Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.064678Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.065171Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.066791Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.068874Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:08:54.069884Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:08:54.099554Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.099617Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.100093Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.100658Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.103465Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:08:54.104513Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:08:54.110045Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.110496Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.113721Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:08:54.143212Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.143737Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.146466Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:08:54.208002Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.208513Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.211300Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:08:54.240647Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.241214Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.243922Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:08:54.305398Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.305936Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.308952Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:08:54.370975Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.371570Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.374674Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:08:54.486534Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.487056Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.489970Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:08:54.519296Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.519832Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.522395Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:08:54.551927Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.552443Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.554863Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:08:54.584458Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.584965Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.587761Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:08:54.602179Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.602605Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.605090Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:08:54.666769Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.931303Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.931368Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.931805Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.933532Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.934851Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:08:54.935719Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:08:54.966681Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:54.966738Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.080805Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.081241Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.083806Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:08:55.113568Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.145375Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.145764Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.148530Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:08:55.177860Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.342293Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.342670Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.345683Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.346156Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.346249Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:08:55.348948Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:08:55.378322Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.378382Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.742883Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.743272Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.745610Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:08:55.775308Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.775537Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.775647Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.776187Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.776659Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.778690Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:08:55.781086Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:08:55.782199Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:08:55.811240Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.811294Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.811316Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.811520Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.812177Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.813841Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:08:55.815792Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:08:55.845180Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.845242Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.845409Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:08:55.847690Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:08:55.877398Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:00.802537Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:09.127574Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:09.127574Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] 
[2026-06-04T17:09:09.127574Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:09.127642Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] 
[2026-06-04T17:09:09.127650Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:09.127657Z] [nf-ac1e0fb72e0c2aef3f13d51ede020bec-051d8-25ndm] [596_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec