cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:182000001, elapsed 0.1s, est remaining 1.5s, peak mem 810MB, user 0.1s, sys 2.4s, output queue size 143
progress 10% @chr3:128000001, elapsed 0.2s, est remaining 1.6s, peak mem 810MB, user 0.2s, sys 10.6s, output queue size 306
progress 15% @chr4:103000001, elapsed 0.3s, est remaining 1.4s, peak mem 810MB, user 0.3s, sys 22.3s, output queue size 467
progress 20% @chr1:150000001, elapsed 0.3s, est remaining 1.2s, peak mem 810MB, user 0.5s, sys 38.2s, output queue size 628
progress 25% @chr6:30000001, elapsed 0.4s, est remaining 1.1s, peak mem 810MB, user 0.8s, sys 55.4s, output queue size 642
progress 30% @chr6:59000001, elapsed 0.5s, est remaining 1.1s, peak mem 810MB, user 0.8s, sys 64.6s, output queue size 803
progress 35% @chr7:134000001, elapsed 0.5s, est remaining 1.0s, peak mem 810MB, user 0.9s, sys 74.2s, output queue size 965
progress 40% @chr9:36000001, elapsed 0.6s, est remaining 0.9s, peak mem 810MB, user 1.1s, sys 85.8s, output queue size 1126
progress 45% @chr10:53000001, elapsed 0.7s, est remaining 0.8s, peak mem 810MB, user 1.3s, sys 98.7s, output queue size 1288
progress 50% @chr11:4000001, elapsed 0.7s, est remaining 0.7s, peak mem 810MB, user 1.6s, sys 111.6s, output queue size 1450
progress 55% @chr11:125000001, elapsed 0.8s, est remaining 0.6s, peak mem 810MB, user 2.0s, sys 124.8s, output queue size 1611
progress 60% @chr12:101000001, elapsed 0.8s, est remaining 0.6s, peak mem 810MB, user 2.4s, sys 142.9s, output queue size 1765
progress 65% @chr14:104000001, elapsed 0.9s, est remaining 0.5s, peak mem 810MB, user 3.2s, sys 162.2s, output queue size 1927
progress 70% @chr12:36000001, elapsed 0.9s, est remaining 0.4s, peak mem 810MB, user 3.8s, sys 185.2s, output queue size 2088
progress 75% @chr16:31000001, elapsed 1.0s, est remaining 0.3s, peak mem 810MB, user 4.1s, sys 206.2s, output queue size 2250
progress 80% @chr18:60000001, elapsed 1.1s, est remaining 0.3s, peak mem 810MB, user 4.4s, sys 221.5s, output queue size 2412
progress 85% @chr20:28000001, elapsed 1.2s, est remaining 0.2s, peak mem 810MB, user 4.7s, sys 239.2s, output queue size 337
progress 90% @chrX:39000001, elapsed 1.2s, est remaining 0.1s, peak mem 810MB, user 5.2s, sys 257.5s, output queue size 547
progress 95% @chrY:3000001, elapsed 1.3s, est remaining 0.1s, peak mem 810MB, user 5.5s, sys 274.6s, output queue size 867
progress 100% @HLA-DQA1*05:05:01:03:1, elapsed 1.4s, est remaining 0.0s, peak mem 810MB, user 5.7s, sys 325.9s, output queue size 4083
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.000 user 0.000 sys 0.011 real
"predict_filter": 187 calls 0.025 user 0.000 sys 0.036 real
advance: 3219322 calls 0.420 user 112.610 sys 103.994 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.003 sys 1.512 real
fetch_ref: 476 calls 0.016 user 0.135 sys 1.812 real
idle: 20633 calls 0.601 user 0.852 sys 678.396 real
init: 1 calls 0.363 user 0.105 sys 0.626 real
overall: 849481728 mem 7.815 user 334.688 sys 3.357 real