.command.log - Workdir - DAQ:GERMLINE_CNV:CalcPanelCoverage (HCC1395_tumor)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d69d5ff37781f5f0be9698df0a81bc/.command.log
Size: 1.2 KB
Task: DAQ:GERMLINE_CNV:CalcPanelCoverage (HCC1395_tumor)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d69d5ff37781f5f0be9698df0a81bc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ff6eaa758c6f025b001c9e7a9f6eb5/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.gzi
  Downloading: s3://natera-platform-sandbox/platform_projects/altera_cnv/altera_v3_panel.bed
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/d69d5ff37781f5f0be9698df0a81bc/.command.run
  Downloading: s3://natera-platform-sandbox/ref/hs38/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
==> STAGING COMPLETE (7 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qzma2nt8 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.