Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/9546adc60cb95e88b58c791989bb49/germline_control_1.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/ca4e436e36bebe126a8321f6c82243/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/ca4e436e36bebe126a8321f6c82243/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/9be3a8ed6b415a2cc0b62ec5fb3dc5/germline_control_1.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: germline_control_1.mpileup.gz
Found 18 positions with indel observations
Annotating VCF: germline_control_1.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'germline_control_1.haplotyper.split.vcf.gz'
Output written to: germline_control_1.entropy.vcf