Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d8deb8104439697032b83a3b582eef/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/984ada276a39686e53532178f7d533/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/984ada276a39686e53532178f7d533/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d8deb8104439697032b83a3b582eef/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:09:03.058159Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:09:03.059614Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:09:03.059643Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:09:03.059650Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:09:03.059655Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXXnE8SW'
[2026-06-04T17:09:03.059659Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:09:03.059665Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:09:03.059669Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:09:03.059673Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T17:09:03.059677Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:09:03.059680Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:09:03.059684Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:09:03.059688Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:09:03.059692Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:09:03.060558Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:09:03.060623Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:09:03.067196Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:09:03.068054Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:09:03.068269Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:09:03.068448Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.068953Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:09:03.069965Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.070082Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.070156Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.070697Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.070889Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.070998Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.071179Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.071465Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.072077Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.074108Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.074356Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:09:03.074724Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.074808Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.074932Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075002Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075123Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075189Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075302Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075364Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075546Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075620Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.075892Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076198Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076310Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076373Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076782Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076849Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.076958Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077021Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077130Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077202Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077489Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077831Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.077957Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078020Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078129Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078190Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078305Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078365Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078473Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078531Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078638Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078704Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078807Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.078872Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.079064Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.079581Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.079850Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.079932Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080053Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080122Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080244Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080311Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080427Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080504Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.080716Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081292Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081409Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081472Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081587Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081649Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081763Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.081831Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.095957Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096100Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096176Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096341Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096422Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096512Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096578Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096689Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096757Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:09:03.096807Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:09:03.103704Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.105974Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.106593Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.108436Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.108902Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:03.109208Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.110031Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.111888Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.112131Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:03.112536Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.113314Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.121749Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:03.124110Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:03.126358Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:03.126667Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:03.129878Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:03.180037Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.180885Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.184945Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:03.196151Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:03.197779Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.197843Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.197866Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.197887Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.198598Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.199279Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.201442Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.201659Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:03.201966Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.205496Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:03.206753Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:03.207841Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:03.568824Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.569652Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.572298Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:03.684138Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.684987Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.687793Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:09:03.749306Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.750116Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.752759Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:09:03.782517Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.783318Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.786049Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:03.897894Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.898707Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.901518Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:09:03.930955Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.931744Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.934873Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:03.996117Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.996918Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:03.999833Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:04.029250Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.030025Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.032675Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:09:04.038014Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.038752Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.041654Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:04.071101Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.072585Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.075324Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:04.187346Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.188112Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.191248Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:09:04.252771Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.253587Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.256516Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:04.368136Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.368899Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.371740Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:04.433519Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.434289Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.437473Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:09:04.438678Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.439322Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.441724Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:09:04.471802Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.472503Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.474414Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.475070Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.475523Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:09:04.478084Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:04.507767Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.508482Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.511322Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:04.723623Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.724447Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.727139Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:09:04.756717Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.757426Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.760476Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:04.871997Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.872721Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.875349Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:09:04.937230Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.937945Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.940592Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:09:04.970290Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.970402Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.971018Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.971620Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:04.973841Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:09:04.975044Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:09:05.005828Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.006907Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.007412Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.009461Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.010086Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:09:05.012421Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:09:05.041963Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.042082Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.042655Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.043329Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.046015Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:05.047230Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:09:05.076793Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.077436Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.080335Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:05.109653Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.110430Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.113072Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:09:05.114121Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.114909Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.117412Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:09:05.146798Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.146888Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.147467Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.147824Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.150950Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:05.152099Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:05.212562Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.213198Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.216315Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:05.277732Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.278379Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.280871Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:09:05.310754Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.310862Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.311408Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.311965Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.314669Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:09:05.315672Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:09:05.345536Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.345637Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.346157Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.346771Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.349475Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:05.350370Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:05.380282Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.380832Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.384077Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:09:05.445246Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.445845Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.449234Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:09:05.509953Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.510544Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.513235Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:05.542881Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.543452Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.546419Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:09:05.559706Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.560236Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.563137Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:09:05.568299Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.568822Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.571559Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:09:05.584860Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.600670Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.604490Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.668457Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.669046Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.671974Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:09:05.700987Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.865225Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.865669Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:09:05.868415Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:09:05.897828Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.112449Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.112924Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.115485Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:09:06.177254Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.742740Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.742836Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.743264Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.745095Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.745939Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:09:06.748369Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:09:06.809730Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.809818Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.810050Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.810222Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.810890Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.812781Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.813462Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.816566Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:09:06.816759Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:09:06.845188Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.845276Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.845298Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.845544Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.846223Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.848860Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.849480Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:09:06.879165Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.879238Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.879457Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:09:06.881734Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:09:06.912539Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:09:08.730542Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:09:13.604954Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:09:13.604954Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] 
[2026-06-04T17:09:13.604954Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:09:13.605014Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] 
[2026-06-04T17:09:13.605022Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:09:13.605029Z] [nf-85d8deb8104439697032b83a3b582eef-f5010-lbcmc] [586_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec