[2026-06-04T17:18:58.812935Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:58.816718Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:58.816741Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:58.816753Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:58.816765Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcYOHRZ'
[2026-06-04T17:18:58.816776Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:58.816789Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:58.816799Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:58.816810Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] memMb: 255158
[2026-06-04T17:18:58.816820Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:58.816831Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:58.816842Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:58.816851Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:58.816861Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:58.817398Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:58.817507Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:58.827359Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:58.827938Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:58.828194Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:58.828438Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:58.828818Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.829304Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.829471Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.829609Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.829841Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.830228Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.830898Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.831172Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.831791Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.832508Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.832952Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.834804Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.835808Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:58.835991Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.836357Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.836773Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.837268Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.837400Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.837619Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.837749Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.838104Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.838504Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839124Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839263Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839480Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839604Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839825Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.839959Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.840482Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841019Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841252Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841423Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841649Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.841778Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.842041Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.842443Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843178Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843313Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843534Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843670Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.843891Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.844132Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.845158Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.845451Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.846988Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.847137Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.847772Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.848553Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.848806Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.848947Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.849169Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.849298Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.849560Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.849979Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.851159Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852028Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852269Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852406Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852626Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852758Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.852976Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.853417Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.854441Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.854577Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.854795Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.854938Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.855193Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.855384Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.889639Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.890406Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.890621Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.891384Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.892860Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.893076Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.893650Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.894032Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.896401Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.897403Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.897843Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.898302Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.899219Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.899617Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.900388Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.901544Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.902831Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.910079Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:18:58.915103Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:58.915962Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:18:58.919157Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.922301Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:18:58.925113Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:58.927120Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:58.928061Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:18:58.929943Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:18:58.931145Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:00.046330Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.047587Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.051427Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:19:00.562896Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.564224Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.568007Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:00.580527Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.581734Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.585506Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:19:00.696323Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.696430Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.697626Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.698091Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.701983Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:19:00.703379Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:00.762689Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.763955Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.767777Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:19:01.980533Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.981940Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.985872Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:19:02.697624Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.698844Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.702295Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:19:02.813321Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.814554Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.817882Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:19:02.878767Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.880034Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.883556Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:19:02.944472Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.945659Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.949044Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:19:03.009953Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.011147Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.014458Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:19:03.075294Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.076508Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.080018Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:03.190948Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.192164Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.195527Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:19:03.256349Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.256471Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.257552Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.257914Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.261648Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:03.262583Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:19:03.322399Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.322524Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.323614Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.323986Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.327826Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:03.328914Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:03.388607Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.389734Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.393522Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:03.454145Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.455453Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.458990Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:19:03.487885Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.489126Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.492826Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:19:03.603723Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.604820Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.608541Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:19:03.637064Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.638150Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.642097Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:03.654575Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.655588Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.659083Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:03.719811Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.720918Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.724760Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:03.729102Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.730085Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.733434Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:19:03.794362Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.795483Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.799316Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:19:04.561119Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.562075Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.565737Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:19:04.626556Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.627612Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.631140Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:19:04.692037Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.693042Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.696734Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:19:04.857670Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.858695Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.862507Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:19:04.923110Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.924124Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.927841Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:19:04.988495Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.989513Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.993227Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:05.053876Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.054862Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.058730Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:05.087249Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.088207Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.091704Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:05.152330Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.153327Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.156915Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:06.570085Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.571099Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.574748Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:19:06.635451Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.635573Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.636667Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.637084Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.641035Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:19:06.642208Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:06.701737Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.701858Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.702711Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.703139Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.706807Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:06.707777Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:19:06.767482Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.767576Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.768419Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.768849Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.774019Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:06.774753Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:19:06.777680Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.778463Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.782076Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:06.782609Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.783380Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.787204Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:06.997997Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.998888Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.002308Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:07.063107Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.063998Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.067530Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:19:07.579123Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.580004Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.583324Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:07.644307Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.645749Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.649140Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:19:07.710108Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.710994Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.714284Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:19:07.775287Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.776158Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.779994Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:07.840707Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.872897Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.873671Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.877319Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:19:07.937969Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.553410Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.554151Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.557619Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:19:08.618357Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.782754Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.783497Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.787112Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:08.897784Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.898589Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.901909Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:08.962876Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.327627Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.328305Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.331686Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:09.392453Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.506725Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.507415Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.510482Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:09.571534Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.339029Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.339828Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.343220Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:11.347853Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.348853Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.351862Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:19:11.412975Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.413096Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.413534Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.413749Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.414115Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.414857Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.420472Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:11.422272Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:11.423503Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:11.479381Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.479487Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.479533Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.479923Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.480297Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.483360Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:11.484491Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:11.544608Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.544704Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.545021Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:11.547688Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:11.608910Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:17.824946Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:31.935732Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:31.935732Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] 
[2026-06-04T17:19:31.935732Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:31.935810Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] 
[2026-06-04T17:19:31.935824Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:31.935838Z] [nf-74b064f8a76d620172adb894eb7b73db-cb779-qvmzf] [738_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec