[2026-06-04T17:18:57.457663Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:57.459427Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:57.459446Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:57.459451Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:57.459456Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOs04in'
[2026-06-04T17:18:57.459460Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:57.459465Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:57.459468Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:57.459472Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] memMb: 1547931
[2026-06-04T17:18:57.459475Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:57.459479Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:57.459483Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:57.459486Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:57.459490Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:57.460321Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:57.460385Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:57.466327Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:57.466952Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:57.467251Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:57.467558Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:57.467765Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.468407Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.468499Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.468572Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.468694Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.468902Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.469257Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.469407Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.469498Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.469645Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.469966Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.470403Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.470621Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.470784Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.470918Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.471067Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.472195Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.472816Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.472906Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.473181Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.473464Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.473588Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:57.474229Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.474352Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.474730Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.474842Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475490Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475556Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475665Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475731Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475839Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.475910Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.476024Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.476105Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.476389Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.476656Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.476819Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.477098Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.477416Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.477768Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.477942Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478367Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478478Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478539Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478646Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478707Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478866Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.478931Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479043Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479106Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479210Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479270Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479375Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.479737Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480050Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480113Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480220Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480284Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480414Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480479Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480586Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480645Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480754Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.480817Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.494361Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.494650Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.494722Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.494881Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.494950Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.495035Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.495098Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.495202Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.495268Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:57.495313Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:57.499387Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.500951Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.501272Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.501718Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.503148Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.503727Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.503809Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:18:57.504218Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.504767Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.505490Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.508382Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:18:57.512151Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:18:57.515364Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:18:57.519768Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:57.521073Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:18:57.522318Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:18:57.572365Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.573121Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.576327Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:18:57.585425Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:18:57.589449Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.589507Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.589527Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.590151Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.590705Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.591148Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.591718Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.596891Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:18:57.597641Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:18:57.597930Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.598060Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:18:57.600632Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:18:58.062982Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.063765Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.066967Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:18:58.095897Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.096632Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.099648Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:18:58.160622Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.160689Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.161296Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.161653Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.165067Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:18:58.166112Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:18:58.194107Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.194740Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.197190Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:18:58.226587Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.227208Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.229807Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:18:58.242967Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.243538Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.246033Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:18:58.357556Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.357633Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.358271Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.358867Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.361833Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:18:58.362955Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:18:58.390968Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.391641Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.393939Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:18:58.423770Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.424426Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.427759Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:18:58.456700Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.457352Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.460001Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:18:58.489339Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.489985Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.492954Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:18:58.521977Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.522555Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.525005Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:18:58.555498Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.556091Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.558911Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:18:58.720550Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.721217Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.724139Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:18:58.753348Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.753912Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.756703Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:18:58.818070Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.818717Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.821610Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:18:58.850828Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.851419Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.854370Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:18:58.915905Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.916618Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.918983Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.919645Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:18:58.919983Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.922397Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:18:58.935691Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.936325Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.938993Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:18:58.952397Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.952486Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.953001Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.953522Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.955836Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:58.956867Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:18:58.970004Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.970571Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.973480Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:18:59.002787Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.003286Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.005602Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:59.011065Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.011532Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.013807Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:18:59.027172Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.027652Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.030383Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:18:59.031541Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.032093Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.034633Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:18:59.039971Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.040424Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.042599Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:18:59.104281Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.104790Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.107267Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:18:59.136723Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.137204Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.139914Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:18:59.169236Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.169749Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.172578Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:18:59.201897Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.202377Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.204951Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:18:59.316850Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.317446Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.320604Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:18:59.350678Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.351226Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.354209Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:18:59.415573Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.416087Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.418974Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:18:59.448092Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.448172Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.448608Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.449157Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.452089Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:18:59.453363Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:18:59.481334Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.481847Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.484134Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.484385Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:18:59.484975Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.488187Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:18:59.517346Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.517421Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.517803Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.518301Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.520849Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:18:59.522125Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:18:59.551469Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.615464Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.615890Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.619128Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:18:59.648340Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.712222Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.712723Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.715504Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:18:59.746084Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.860143Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.860568Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.863370Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:18:59.892459Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.956297Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.956682Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.959168Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:18:59.988652Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.102558Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.102954Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.105290Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:19:00.135072Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.700024Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.700606Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.703212Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:19:00.732441Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.196991Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.197402Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.200053Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:19:01.229441Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.229687Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.229812Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.230240Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.232476Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.233512Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:01.235933Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:01.237052Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:01.265015Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.265079Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.265102Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.265311Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.266881Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.268252Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:01.269006Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:01.299870Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.299921Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.300071Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.302538Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:01.332179Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.098970Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:08.021826Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:08.021826Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] 
[2026-06-04T17:19:08.021826Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:08.021893Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] 
[2026-06-04T17:19:08.021900Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:08.021906Z] [nf-60036ed73b411d21a1c6573d400392cf-d61bf-g28qw] [588_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec