Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/79fed2854648e7b1c6eacc5ac5c2dd/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/79fed2854648e7b1c6eacc5ac5c2dd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/6f30f053f806e6768e1fd6ffdb7013/Sig_18_Blood.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/6f30f053f806e6768e1fd6ffdb7013/Sig_18_Blood.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:165000001, elapsed 0.0s, est remaining 0.6s, peak mem 102MB, user 0.2s, sys 0.4s, output queue size 7
progress 10% @chr2:73000001, elapsed 0.1s, est remaining 0.5s, peak mem 102MB, user 0.5s, sys 0.9s, output queue size 18
progress 15% @chr2:233000001, elapsed 0.1s, est remaining 0.5s, peak mem 102MB, user 0.7s, sys 1.6s, output queue size 14
progress 20% @chr3:152000001, elapsed 0.1s, est remaining 0.4s, peak mem 102MB, user 1.0s, sys 2.0s, output queue size 3
progress 25% @chr4:114000001, elapsed 0.1s, est remaining 0.4s, peak mem 102MB, user 1.3s, sys 2.5s, output queue size 5
progress 30% @chr5:85000001, elapsed 0.2s, est remaining 0.4s, peak mem 102MB, user 1.6s, sys 3.0s, output queue size 1
progress 35% @chr6:67000001, elapsed 0.2s, est remaining 0.4s, peak mem 102MB, user 1.9s, sys 3.5s, output queue size 4
progress 40% @chr7:59000001, elapsed 0.2s, est remaining 0.3s, peak mem 102MB, user 2.2s, sys 4.1s, output queue size 8
progress 45% @chr8:58000001, elapsed 0.2s, est remaining 0.3s, peak mem 102MB, user 2.4s, sys 4.6s, output queue size 1
progress 50% @chr9:69000001, elapsed 0.3s, est remaining 0.3s, peak mem 102MB, user 2.7s, sys 5.1s, output queue size 5
progress 55% @chr10:89000001, elapsed 0.3s, est remaining 0.2s, peak mem 102MB, user 3.1s, sys 5.5s, output queue size 13
progress 60% @chr11:122000001, elapsed 0.3s, est remaining 0.2s, peak mem 102MB, user 3.3s, sys 6.0s, output queue size 7
progress 65% @chr13:11000001, elapsed 0.3s, est remaining 0.2s, peak mem 102MB, user 3.6s, sys 6.6s, output queue size 7
progress 70% @chr14:58000001, elapsed 0.4s, est remaining 0.2s, peak mem 102MB, user 3.8s, sys 7.2s, output queue size 5
progress 75% @chr16:18000001, elapsed 0.4s, est remaining 0.1s, peak mem 102MB, user 4.1s, sys 7.6s, output queue size 6
progress 80% @chr18:4000001, elapsed 0.4s, est remaining 0.1s, peak mem 102MB, user 4.3s, sys 8.3s, output queue size 8
progress 85% @chr20:27000001, elapsed 0.5s, est remaining 0.1s, peak mem 102MB, user 4.6s, sys 8.8s, output queue size 13
progress 90% @chrX:35000001, elapsed 0.5s, est remaining 0.1s, peak mem 120MB, user 5.0s, sys 9.3s, output queue size 114
progress 95% @chrY:32000001, elapsed 0.5s, est remaining 0.0s, peak mem 132MB, user 5.6s, sys 9.9s, output queue size 276
progress 100% @chr21:41000001, elapsed 0.8s, est remaining 0.0s, peak mem 150MB, user 6.6s, sys 11.0s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52290609
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.190 user 6.004 sys 7.087 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.000 user 0.010 sys 0.853 real
idle: 73 calls 0.006 user 0.006 sys 38.781 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 157384704 mem 6.821 user 11.519 sys 2.004 real