Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/58322c2f9c9b0e77b0518b4468b52a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/7fb75bb19bef014eecf269a038384b/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/7fb75bb19bef014eecf269a038384b/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/58322c2f9c9b0e77b0518b4468b52a/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:18:56.436258Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:56.437058Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:56.437066Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:56.437071Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:56.437074Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPa7g44'
[2026-06-04T17:18:56.437078Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:56.437083Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:56.437086Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:56.437090Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:18:56.437093Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:56.437097Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:56.437101Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:56.437104Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:56.437108Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:56.437745Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:56.437863Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:56.443552Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:56.444288Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:56.444429Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:56.444695Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:56.444973Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445326Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445418Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445498Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445657Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445723Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445841Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.445904Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446018Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446080Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446192Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446369Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446749Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446884Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.446971Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.447098Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.447729Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.448133Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.449393Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.449756Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:56.450260Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.450599Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.450764Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.450865Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.450986Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451057Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451181Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451259Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451406Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451495Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.451759Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452067Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452191Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452256Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452368Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452436Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452546Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452612Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452720Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452785Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452901Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.452966Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.453222Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.453545Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454026Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454090Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454204Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454269Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454440Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454507Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.454742Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455121Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455233Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455299Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455410Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455471Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455600Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455671Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455786Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455853Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.455969Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456034Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456279Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456691Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456801Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456870Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.456979Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.457046Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.471878Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472296Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472371Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472529Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472600Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472687Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.472759Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.474091Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.474640Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:56.474693Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:56.477248Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.477839Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.478157Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.478710Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.479238Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.479749Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.480314Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.482256Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:18:56.482923Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.483987Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.488807Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:56.490764Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:18:56.495764Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:56.497497Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:56.498267Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:18:56.499281Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:56.500332Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:56.601354Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.601431Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.602118Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.602540Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.606083Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:18:56.607034Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:18:57.268897Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.269798Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.272837Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:57.334116Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.334938Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.337925Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:18:57.900408Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.901192Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.904281Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:57.965533Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.966357Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.969160Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:57.998388Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.999194Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.002080Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:18:58.113634Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.113712Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.114438Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.114826Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.117820Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:58.118801Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:18:58.147599Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.148394Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.151181Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:58.180915Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.181687Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.184425Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:18:58.213984Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.214063Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.214759Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.215313Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.218358Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:18:58.219352Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:18:58.231301Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.232019Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.234431Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:58.264031Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.264107Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.264771Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.265031Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.268030Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:18:58.269338Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:18:58.297035Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.297746Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.300541Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:58.329785Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.330517Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.333593Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:58.444733Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.445461Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.447872Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:58.477478Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.478185Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.480839Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:58.542289Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.543014Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.545944Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:58.575120Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.575870Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.578607Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:18:58.890726Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.891494Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.894533Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:18:59.206600Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.207305Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.210465Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:18:59.271896Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.272619Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.275811Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:18:59.638059Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.638155Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.638807Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.639262Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.642037Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:18:59.643077Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:59.655470Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.656145Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.658704Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:18:59.688169Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.688263Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.688291Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.688901Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.689105Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.689486Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.693218Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:59.694032Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:59.694163Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:59.722029Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.722745Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.723124Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.725033Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.725755Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:18:59.727869Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:18:59.733062Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.733608Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.736317Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:18:59.797548Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.797633Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.797657Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.798240Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.798522Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.798770Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.802702Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:18:59.804387Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:18:59.805442Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:18:59.832690Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.833323Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.836114Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:00.298705Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.299361Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.302264Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:19:00.331617Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.332257Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.335140Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:19:00.546877Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.547484Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.550342Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:19:00.611698Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.612323Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.615272Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:19:00.676499Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.676587Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.677169Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.677448Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.680465Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:00.681538Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:00.742248Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.742844Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.745783Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:19:00.857581Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.858167Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.860966Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:00.922492Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.923074Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.925820Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:00.987311Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.987901Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.990426Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:19:01.019947Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.020501Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.023408Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:01.285356Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.285447Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.285943Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.286225Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.289220Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:01.290383Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:19:01.318609Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.319485Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.319788Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.321631Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.322314Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:19:01.324639Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:19:01.329489Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.329914Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.332539Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:19:01.361786Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.361879Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.361902Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.576316Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.576402Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.576813Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.577143Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.580072Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:01.580868Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:19:01.610110Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.610199Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.025346Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.025787Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.028239Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:02.057776Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.272260Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.272667Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.275063Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:19:02.336683Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.952022Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.952416Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.954732Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:02.984193Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.984432Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.984558Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.984930Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.985149Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.988605Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:02.989665Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:02.990469Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:03.017852Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.017913Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.017937Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.018116Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.018515Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.020962Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:03.021483Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:03.050797Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.050858Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.051019Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.052915Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:03.082914Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.004634Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:15.325541Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:15.325541Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] 
[2026-06-04T17:19:15.325541Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:15.325646Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] 
[2026-06-04T17:19:15.325654Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:15.325660Z] [nf-4b58322c2f9c9b0e77b0518b4468b52a-7ce54-xzdh7] [577_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec