cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144255509, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2051
progress 10% @chr9:36833270, elapsed 0.1s, est remaining 0.7s, peak mem 81MB, user 0.0s, sys 0.3s, output queue size 4271
progress 15% @chr9:96655090, elapsed 0.1s, est remaining 0.6s, peak mem 87MB, user 0.1s, sys 0.4s, output queue size 6051
progress 20% @chr9:128945687, elapsed 0.2s, est remaining 0.6s, peak mem 99MB, user 0.1s, sys 0.6s, output queue size 8673
progress 25% @chr10:14899250, elapsed 0.2s, est remaining 0.6s, peak mem 108MB, user 0.2s, sys 0.8s, output queue size 942
progress 30% @chr10:69208600, elapsed 0.2s, est remaining 0.6s, peak mem 114MB, user 0.2s, sys 1.0s, output queue size 3328
progress 35% @chr10:100506040, elapsed 0.3s, est remaining 0.5s, peak mem 129MB, user 0.2s, sys 1.2s, output queue size 5982
progress 40% @chr11:294556, elapsed 0.3s, est remaining 0.5s, peak mem 135MB, user 0.3s, sys 1.5s, output queue size 8565
progress 45% @chr11:17878208, elapsed 0.4s, est remaining 0.5s, peak mem 144MB, user 0.3s, sys 1.6s, output queue size 10720
progress 50% @chr11:61416105, elapsed 0.4s, est remaining 0.4s, peak mem 153MB, user 0.4s, sys 1.9s, output queue size 13085
progress 55% @chr11:73234160, elapsed 0.5s, est remaining 0.4s, peak mem 162MB, user 0.4s, sys 2.0s, output queue size 15759
progress 60% @chr11:114444541, elapsed 0.5s, est remaining 0.3s, peak mem 177MB, user 0.5s, sys 2.2s, output queue size 18046
progress 65% @chr12:6462034, elapsed 0.5s, est remaining 0.3s, peak mem 183MB, user 0.5s, sys 2.4s, output queue size 20406
progress 70% @chr12:31697740, elapsed 0.6s, est remaining 0.2s, peak mem 195MB, user 0.5s, sys 2.6s, output queue size 22500
progress 75% @chr12:55967857, elapsed 0.6s, est remaining 0.2s, peak mem 204MB, user 0.6s, sys 2.8s, output queue size 24973
progress 80% @chr12:100058029, elapsed 0.7s, est remaining 0.2s, peak mem 216MB, user 0.6s, sys 3.0s, output queue size 27706
progress 85% @chr12:123781080, elapsed 0.7s, est remaining 0.1s, peak mem 231MB, user 0.7s, sys 3.2s, output queue size 30559
progress 90% @chr13:48465203, elapsed 0.8s, est remaining 0.1s, peak mem 234MB, user 0.7s, sys 3.4s, output queue size 32931
progress 95% @chr14:22633768, elapsed 0.8s, est remaining 0.0s, peak mem 243MB, user 0.7s, sys 3.7s, output queue size 35183
progress 100% @chr14:56801735, elapsed 0.9s, est remaining 0.0s, peak mem 258MB, user 0.8s, sys 3.9s, output queue size 37736
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692770
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.001 user 0.006 sys 0.018 real
advance: 50143 calls 0.002 user 0.007 sys 0.019 real
calc: 98785 calls 0.005 user 0.005 sys 0.018 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.002 sys 1.604 real
fetch: 98785 calls 0.004 user 0.000 sys 0.019 real
fetch_ref: 98785 calls 0.095 user 0.034 sys 0.353 real
idle: 39 calls 0.005 user 0.016 sys 21.112 real
init: 1 calls 0.041 user 0.009 sys 0.043 real
region: 98785 calls 0.000 user 0.000 sys 0.022 real
tracker: 98785 calls 0.027 user 0.003 sys 0.090 real
overall: 270704640 mem 1.364 user 5.992 sys 2.722 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory