Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/576afef5aee0435598f1c27a4e8de7/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/ff43d6212aed947f52393df37c7425/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/ff43d6212aed947f52393df37c7425/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fcxitrzw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:20:57,096 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:20:57,931 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:20:58,102 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:20:59,044 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:20:59,205 - cnv_pipe.batch.run_model - INFO - Processing cluster 82 with 171 probes
2026-06-04 17:20:59,574 - cnv_pipe.batch.run_model.cluster82 - INFO - Child process started for cluster 82 with 171 probes
2026-06-04 17:21:51,314 - cnv_pipe.batch.run_model.cluster82 - INFO - Child process finished cluster 82. Wrote cluster_82_samples.csv and cluster_82_params.csv
2026-06-04 17:21:51,316 - cnv_pipe.batch.run_model - INFO - Cluster 82 finished in 52.11 seconds. Status: SUCCESS