Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/65d2a9345e97a134eb15bc01b67beb/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/865cca127ef55735114af272c0461e/Sig_18_tissue.recalibrated.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/865cca127ef55735114af272c0461e/Sig_18_tissue.recalibrated.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/65d2a9345e97a134eb15bc01b67beb/.command.run
==> STAGING COMPLETE (10 inputs)
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:18:52.807272Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:52.810388Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:52.810420Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:52.810427Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:52.810432Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXMz4dxM'
[2026-06-04T17:18:52.810436Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:52.810441Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:52.810445Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:52.810448Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T17:18:52.810452Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:52.810456Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:52.810459Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:52.810463Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:52.810467Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:52.811321Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:52.811473Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:52.817446Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:52.818179Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:52.818354Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:52.818658Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:52.818858Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.819524Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.820424Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.820633Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.820977Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.821531Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.822866Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.823557Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:52.823710Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.823810Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.823933Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824005Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824126Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824192Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824304Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824368Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824482Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824586Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.824821Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825086Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825356Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825596Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825708Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825779Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825894Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.825958Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826073Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826134Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826251Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826318Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826428Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826502Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.826707Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827106Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827445Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827514Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827628Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827692Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827802Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.827868Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828036Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828113Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828226Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828295Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828449Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.828617Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829101Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829570Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829687Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829755Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829866Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829930Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.830047Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.830110Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.830217Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.830277Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846021Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846420Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846492Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846650Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846721Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846805Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.846874Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.847077Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.847215Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.847268Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:52.847543Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.848238Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.848702Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.849441Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.850506Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.851706Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.852607Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.855690Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.856273Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:18:52.856967Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.862342Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:18:52.863538Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:18:52.866700Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:18:52.870928Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:18:52.873264Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:18:52.875464Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:18:52.876108Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:18:52.921852Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.922465Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.926115Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:18:52.930473Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.931105Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.935037Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.935598Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:18:52.935996Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.939528Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:18:52.944269Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.944794Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.947139Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:18:53.710315Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.711019Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.713768Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:18:53.775302Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.776056Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.778908Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:18:53.808250Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.808932Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.811530Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-04T17:18:53.841127Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.841758Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.844537Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:53.905895Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.905980Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.906568Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.906822Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.910232Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:18:53.911211Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:18:54.122123Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.122847Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.125646Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:18:54.187021Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.187742Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.190764Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-04T17:18:54.219854Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.220531Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.223143Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-04T17:18:54.228338Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.229129Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.231859Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:18:54.261284Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.261899Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.264863Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:18:54.325849Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.326717Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.329645Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-04T17:18:54.390976Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.391641Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.394437Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:18:54.399254Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.399735Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.402453Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-04T17:18:54.431578Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.432132Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.435083Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:54.464169Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.464721Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.467338Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:18:54.678944Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.679579Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.682534Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:18:54.844359Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.845030Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.847902Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-04T17:18:54.876989Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.877594Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.880464Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:18:54.909663Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.910241Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.913111Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-04T17:18:54.942196Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.942765Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.945380Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-04T17:18:54.974934Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.975530Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.978307Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:18:55.340169Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.340711Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.343534Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-04T17:18:55.404716Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.405310Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.408359Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:18:55.437360Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.437923Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.440994Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:18:55.502478Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.502562Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.503073Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.503528Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.506305Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-04T17:18:55.507267Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-04T17:18:55.536976Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.537060Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.537540Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.537829Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.540617Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-04T17:18:55.541818Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-04T17:18:55.553743Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.554206Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.556840Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:18:55.570456Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.570602Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.571043Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.571623Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.574587Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-04T17:18:55.576122Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.576656Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.577086Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:18:55.579268Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-04T17:18:55.608536Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.608605Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.608998Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.609236Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.612227Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:18:55.613286Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:18:55.924574Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.925098Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.927930Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-04T17:18:55.957016Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.988912Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.989342Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.992277Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-04T17:18:56.021486Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.637157Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.637640Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.640547Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-04T17:18:56.701811Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.916422Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.916522Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.916922Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.917248Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.920101Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-04T17:18:56.920756Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-04T17:18:56.949436Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.949508Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.981475Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.981867Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.984161Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-04T17:18:57.013686Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.529035Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.529467Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.531914Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-04T17:18:57.561257Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.568867Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.569192Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.572032Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:18:57.601070Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.601297Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.601420Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.601703Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.601974Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.605552Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:18:57.606580Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:18:57.607239Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:18:57.634671Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.634737Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.634757Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.634937Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.635184Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.637623Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:18:57.638549Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:18:57.699365Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.699462Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.699645Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.701848Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:18:57.731554Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.497145Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:03.374497Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:03.374497Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner]
[2026-06-04T17:19:03.374497Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] workflow version: 2.9.10
[2026-06-04T17:19:03.374564Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner]
[2026-06-04T17:19:03.374569Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:03.374575Z] [nf-3f65d2a9345e97a134eb15bc01b67beb-d0afc-tjg28] [587_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec