[2026-06-04T17:18:46.241313Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Initiating pyFlow run [2026-06-04T17:18:46.242203Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow [2026-06-04T17:18:46.242213Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20 [2026-06-04T17:18:46.242218Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0 [2026-06-04T17:18:46.242222Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXzNytuU' [2026-06-04T17:18:46.242226Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8' [2026-06-04T17:18:46.242231Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] mode: local [2026-06-04T17:18:46.242235Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] nCores: 8 [2026-06-04T17:18:46.242238Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] memMb: 3047507 [2026-06-04T17:18:46.242242Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data [2026-06-04T17:18:46.242245Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False [2026-06-04T17:18:46.242249Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] isContinue: False [2026-06-04T17:18:46.242253Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True [2026-06-04T17:18:46.242257Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [RunParameters] mailTo: '' [2026-06-04T17:18:46.243052Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow [2026-06-04T17:18:46.243156Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10 [2026-06-04T17:18:46.248838Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow [2026-06-04T17:18:46.249616Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow [2026-06-04T17:18:46.249848Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow [2026-06-04T17:18:46.250065Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow [2026-06-04T17:18:46.250324Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251032Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251125Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251201Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251316Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251395Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251685Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.251995Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.252093Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.252440Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.252810Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.253433Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.253569Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.254901Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.255301Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.255565Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node [2026-06-04T17:18:46.256042Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.256309Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.256640Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.256943Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257140Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257210Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257321Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257390Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257507Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257568Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257687Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257750Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257858Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.257957Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.258199Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.258401Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.259273Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.259648Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.259762Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.259830Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.259939Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260002Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260111Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260174Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260304Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260370Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260487Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260551Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260659Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.260817Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261309Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261428Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261542Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261610Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261723Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261789Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261898Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.261961Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.262070Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.262130Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.262244Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.262361Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.262706Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263177Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263291Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263352Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263534Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263606Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263721Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263788Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263895Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.263957Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.264062Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.264128Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.264643Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.265059Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.265171Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.265234Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.283618Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.283987Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:46.284131Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.284803Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.285008Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.285248Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.285669Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.285888Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.286613Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.286811Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.287816Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.288153Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.289156Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.289599Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.291045Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome' [2026-06-04T17:18:46.291978Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node [2026-06-04T17:18:46.292277Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.292698Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow [2026-06-04T17:18:46.293927Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.295130Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.298319Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node [2026-06-04T17:18:46.303795Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node [2026-06-04T17:18:46.307199Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node [2026-06-04T17:18:46.312347Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node [2026-06-04T17:18:46.314566Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node [2026-06-04T17:18:46.315536Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node [2026-06-04T17:18:46.429139Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:46.429899Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.436269Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node [2026-06-04T17:18:46.546073Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:46.546985Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:46.551017Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node [2026-06-04T17:18:47.865243Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:47.866491Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:47.869742Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node [2026-06-04T17:18:47.931061Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:47.932296Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:47.935757Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node [2026-06-04T17:18:48.047341Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node [2026-06-04T17:18:48.097210Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.097303Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.098071Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.100384Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.102518Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node [2026-06-04T17:18:48.104454Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node [2026-06-04T17:18:48.133150Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.133979Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.137347Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node [2026-06-04T17:18:48.166340Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.167418Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.170723Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node [2026-06-04T17:18:48.199677Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.200485Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.204275Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node [2026-06-04T17:18:48.264911Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.264982Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.265004Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.265696Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.266783Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.268256Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.273503Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node [2026-06-04T17:18:48.277294Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node [2026-06-04T17:18:48.278626Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.279563Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.280496Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node [2026-06-04T17:18:48.283197Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node [2026-06-04T17:18:48.312691Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.313816Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.314116Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.316525Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.317181Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node [2026-06-04T17:18:48.319562Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node [2026-06-04T17:18:48.348689Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.349729Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.350215Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.352642Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.354709Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node [2026-06-04T17:18:48.355861Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node [2026-06-04T17:18:48.417290Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.417367Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.418049Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.418394Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.422661Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node [2026-06-04T17:18:48.423968Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node [2026-06-04T17:18:48.483685Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.484518Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.488018Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node [2026-06-04T17:18:48.517158Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.517847Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.521381Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node [2026-06-04T17:18:48.883439Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.884375Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.888489Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node [2026-06-04T17:18:48.949308Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:48.950125Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:48.953557Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node [2026-06-04T17:18:49.065029Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.065810Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.069167Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node [2026-06-04T17:18:49.074032Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.074732Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.077620Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node [2026-06-04T17:18:49.107060Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.107143Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.107843Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.108286Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.112621Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node [2026-06-04T17:18:49.113699Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node [2026-06-04T17:18:49.424324Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.425172Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.428375Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node [2026-06-04T17:18:49.433299Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.433927Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.436710Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node [2026-06-04T17:18:49.449696Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.450335Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.453015Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node [2026-06-04T17:18:49.458034Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.458694Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.461751Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node [2026-06-04T17:18:49.466454Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.466960Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.469668Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node [2026-06-04T17:18:49.482989Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.483553Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.486873Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node [2026-06-04T17:18:49.547717Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.548372Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.551166Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node [2026-06-04T17:18:49.612580Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.613262Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.616336Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node [2026-06-04T17:18:49.878194Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.878993Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.882766Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node [2026-06-04T17:18:49.943723Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:49.944488Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:49.948048Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node [2026-06-04T17:18:50.009272Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.009379Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.010076Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.010558Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.014714Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node [2026-06-04T17:18:50.016498Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node [2026-06-04T17:18:50.075486Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.075575Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.076259Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.076723Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.080477Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node [2026-06-04T17:18:50.081788Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node [2026-06-04T17:18:50.141272Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.141375Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.142047Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.142458Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.147359Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node [2026-06-04T17:18:50.148818Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node [2026-06-04T17:18:50.408275Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.409086Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.412910Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node [2026-06-04T17:18:50.474509Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.475237Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.478563Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node [2026-06-04T17:18:50.540049Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.540791Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.544127Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node [2026-06-04T17:18:50.605552Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.605658Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.605690Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.606395Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.606800Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.609010Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.610745Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node [2026-06-04T17:18:50.612876Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node [2026-06-04T17:18:50.614492Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node [2026-06-04T17:18:50.675740Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.675837Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.675870Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.676511Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.677013Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.677793Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.682442Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node [2026-06-04T17:18:50.683883Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node [2026-06-04T17:18:50.685339Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node [2026-06-04T17:18:50.711093Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.711673Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.714653Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node [2026-06-04T17:18:50.715507Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.715902Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.718887Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node [2026-06-04T17:18:50.731888Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.732433Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.735255Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node [2026-06-04T17:18:50.748542Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.749018Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.751887Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node [2026-06-04T17:18:50.781158Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.781234Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.781667Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.782129Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.784906Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.785193Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node [2026-06-04T17:18:50.787641Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.788350Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node [2026-06-04T17:18:50.790480Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node [2026-06-04T17:18:50.819856Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.819942Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.820381Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome' [2026-06-04T17:18:50.823425Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node [2026-06-04T17:18:50.824565Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:50.856576Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.522448Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.523045Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome' [2026-06-04T17:18:51.526827Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node [2026-06-04T17:18:51.539278Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.539706Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome' [2026-06-04T17:18:51.542366Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node [2026-06-04T17:18:51.571644Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.575257Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.639300Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.639774Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome' [2026-06-04T17:18:51.643469Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node [2026-06-04T17:18:51.704572Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.969281Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:51.969822Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome' [2026-06-04T17:18:51.972973Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node [2026-06-04T17:18:52.002216Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.066268Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.066735Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.070190Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node [2026-06-04T17:18:52.131089Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.131393Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.131567Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.131988Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.132764Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.138078Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node [2026-06-04T17:18:52.139905Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node [2026-06-04T17:18:52.141705Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node [2026-06-04T17:18:52.165311Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.165558Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.166282Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.166488Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.170491Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node [2026-06-04T17:18:52.171049Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.172051Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node [2026-06-04T17:18:52.202756Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.202819Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:52.203014Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome' [2026-06-04T17:18:52.205884Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node [2026-06-04T17:18:52.267033Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome' [2026-06-04T17:18:56.843065Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow [2026-06-04T17:19:05.131162Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed. [2026-06-04T17:19:05.131162Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [2026-06-04T17:19:05.131162Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] workflow version: 2.9.10 [2026-06-04T17:19:05.131257Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] [2026-06-04T17:19:05.131271Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Workflow successfully completed all tasks [2026-06-04T17:19:05.131278Z] [nf-f384f4b9b7b70aecaf2142b2beb8c817-b9a4b-dc8w8] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec