cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:131000001, elapsed 0.1s, est remaining 1.8s, peak mem 807MB, user 0.2s, sys 1.8s, output queue size 131
progress 10% @chr2:192000001, elapsed 0.2s, est remaining 1.5s, peak mem 807MB, user 0.7s, sys 6.0s, output queue size 292
progress 15% @chr4:42000001, elapsed 0.2s, est remaining 1.4s, peak mem 807MB, user 1.2s, sys 10.7s, output queue size 455
progress 20% @chr5:32000001, elapsed 0.3s, est remaining 1.2s, peak mem 807MB, user 1.8s, sys 16.2s, output queue size 616
progress 25% @chr5:147000001, elapsed 0.4s, est remaining 1.1s, peak mem 807MB, user 3.0s, sys 19.5s, output queue size 777
progress 30% @chr7:56000001, elapsed 0.4s, est remaining 1.0s, peak mem 807MB, user 3.7s, sys 20.7s, output queue size 938
progress 35% @chr8:48000001, elapsed 0.5s, est remaining 0.9s, peak mem 807MB, user 4.8s, sys 22.4s, output queue size 1099
progress 40% @chr9:104000001, elapsed 0.6s, est remaining 0.9s, peak mem 807MB, user 5.9s, sys 24.7s, output queue size 1261
progress 45% @chr10:38000001, elapsed 0.7s, est remaining 0.8s, peak mem 807MB, user 7.1s, sys 27.2s, output queue size 1422
progress 50% @chr11:84000001, elapsed 0.7s, est remaining 0.7s, peak mem 807MB, user 8.5s, sys 29.5s, output queue size 1524
progress 55% @chr12:15000001, elapsed 0.8s, est remaining 0.7s, peak mem 807MB, user 9.2s, sys 32.6s, output queue size 1686
progress 60% @chr11:32000001, elapsed 0.9s, est remaining 0.6s, peak mem 807MB, user 9.8s, sys 36.8s, output queue size 1848
progress 65% @chr15:101000001, elapsed 1.0s, est remaining 0.5s, peak mem 807MB, user 10.3s, sys 42.6s, output queue size 2009
progress 70% @chr16:26000001, elapsed 1.0s, est remaining 0.4s, peak mem 807MB, user 11.1s, sys 47.6s, output queue size 2172
progress 75% @chr20:27000001, elapsed 1.1s, est remaining 0.4s, peak mem 807MB, user 11.8s, sys 52.6s, output queue size 2333
progress 80% @chrX:6000001, elapsed 1.2s, est remaining 0.3s, peak mem 807MB, user 12.6s, sys 58.1s, output queue size 2495
progress 85% @chrX:37000001, elapsed 1.2s, est remaining 0.2s, peak mem 807MB, user 13.2s, sys 63.2s, output queue size 2678
progress 90% @chr16_KI270853v1_alt:2000001, elapsed 1.3s, est remaining 0.1s, peak mem 807MB, user 13.7s, sys 68.8s, output queue size 3011
progress 95% @chrX:113000001, elapsed 1.4s, est remaining 0.1s, peak mem 807MB, user 14.1s, sys 74.3s, output queue size 4008
progress 100% @HLA-DRB1*14:54:01:1, elapsed 1.6s, est remaining 0.0s, peak mem 807MB, user 14.6s, sys 87.3s, output queue size 1612
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.001 user 0.000 sys 0.011 real
"predict_filter": 187 calls 0.000 user 0.014 sys 0.038 real
advance: 3219322 calls 0.976 user 33.075 sys 47.852 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.012 user 0.004 sys 1.673 real
fetch_ref: 476 calls 0.015 user 0.052 sys 1.655 real
idle: 20633 calls 0.846 user 0.575 sys 993.401 real
init: 1 calls 0.355 user 0.102 sys 1.438 real
overall: 846336000 mem 16.518 user 92.264 sys 4.347 real