Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/576afef5aee0435598f1c27a4e8de7/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c76a44035117e2aa98a4baaf61cc9c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/c8c4c8c3d707b0c798a4c2c73f73e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/c8c4c8c3d707b0c798a4c2c73f73e3/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_zgcdlnw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:23:30,329 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:23:31,117 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:23:31,276 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:23:32,138 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:23:32,286 - cnv_pipe.batch.run_model - INFO - Processing cluster 892 with 194 probes
2026-06-04 17:23:32,652 - cnv_pipe.batch.run_model.cluster892 - INFO - Child process started for cluster 892 with 194 probes
2026-06-04 17:24:27,066 - cnv_pipe.batch.run_model.cluster892 - INFO - Child process finished cluster 892. Wrote cluster_892_samples.csv and cluster_892_params.csv
2026-06-04 17:24:27,067 - cnv_pipe.batch.run_model - INFO - Cluster 892 finished in 54.78 seconds. Status: SUCCESS