[2026-06-04T17:18:52.031642Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:52.032744Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:52.032758Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:52.032762Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:52.032767Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXuEmk3x'
[2026-06-04T17:18:52.032770Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:52.032776Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:52.032779Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:52.032783Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:18:52.032787Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:52.032790Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:52.032794Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:52.032798Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:52.032801Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:52.033493Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:52.033616Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:52.039542Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:52.040293Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:52.040515Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:52.040736Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:52.041049Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.041732Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.041830Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.041902Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.042018Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.042083Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.042430Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.042764Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.042967Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.043244Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.043605Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.044611Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.044797Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.044944Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.045017Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.045509Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.045776Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.045892Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.045957Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.046066Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.046240Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.048948Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.049282Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:52.049830Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.050263Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.050506Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.050939Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051008Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051120Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051187Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051298Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051365Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051491Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.051656Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.052802Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.052872Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.052986Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053059Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053202Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053275Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053391Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053452Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053566Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053630Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053738Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.053857Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.054297Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.054595Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.054772Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.054841Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.054953Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055021Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055134Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055204Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055319Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055384Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055497Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055565Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.055827Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.056356Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.056474Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.056537Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.056651Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.056718Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.071964Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072073Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072140Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072308Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072385Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072470Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072543Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072652Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072721Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.072946Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:52.076795Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.077440Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.079173Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.080076Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.082861Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:18:52.083128Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.084204Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.085107Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.086104Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.087262Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.092973Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:18:52.096428Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:18:52.103856Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:18:52.106486Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:18:52.107960Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:18:52.111509Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:18:52.112372Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:18:52.208805Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.208901Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.209621Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.210557Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.215773Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:18:52.217634Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:18:52.527602Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.528433Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.531849Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:18:52.593068Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.594233Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.598316Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:18:52.659187Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.659282Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.660053Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.660467Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.664483Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:18:52.665724Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:18:52.693134Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.693943Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.696935Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:18:52.697838Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.698457Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.701973Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:18:52.763199Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.763963Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.767337Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:18:52.828539Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.829237Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832852Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:18:52.861770Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.863010Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.863542Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.866785Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.869212Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:18:52.870320Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:18:52.875678Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.876378Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.879175Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:18:52.908452Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.908548Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.909166Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.909546Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.914022Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:18:52.914812Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:18:52.974955Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.975713Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.979315Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:18:53.240874Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.241584Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.245456Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:18:53.306228Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.306965Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.310409Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:18:53.323367Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.324071Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.327555Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:18:53.340524Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.341170Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.344595Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:18:53.406133Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.406824Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.410017Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:18:53.471244Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.471953Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.476868Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:18:53.505451Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.506071Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.509811Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:18:53.538713Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.539409Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.542505Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:18:53.543137Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.543676Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.546646Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:53.575822Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.576436Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.580694Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:18:53.609735Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.609817Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.610463Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.610914Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.614797Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:18:53.615832Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:18:53.776642Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.777333Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.780477Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:18:53.841583Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.842305Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.845589Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:18:53.846157Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.846760Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.849238Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:18:53.910882Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.910969Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.911538Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.912015Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.916431Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:18:53.917209Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:18:53.977535Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.977629Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.978346Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.978764Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.983574Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:18:53.984724Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:18:54.044440Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.045074Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.049131Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:18:54.061737Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.062370Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.065589Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:18:54.127097Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.127184Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.127740Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.128323Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.132352Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:18:54.133946Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:18:54.193394Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.193472Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.193983Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.194527Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.199136Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:18:54.200709Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:18:54.203569Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.204017Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.207015Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:18:54.268224Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.268311Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.268802Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.269210Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.273125Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:18:54.274197Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:54.333953Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.334051Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.334571Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.334939Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.338298Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:18:54.339500Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:18:54.399675Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.399769Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.400237Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.401032Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.405252Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:18:54.406545Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:18:54.409897Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.410456Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.413669Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:18:54.442860Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.444451Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.658935Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.659039Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.659519Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.660164Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.663653Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:18:54.664478Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:18:54.724877Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.724992Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.190356Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.190804Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.194766Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:18:55.255696Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.670866Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.671392Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.674900Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:18:55.736070Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.850494Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.851127Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.854044Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:18:55.915489Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.230494Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.230985Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.234428Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:18:56.295622Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.295980Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.296210Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.297078Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.298052Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.304628Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:18:56.306987Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:18:56.308120Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:18:56.363578Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.363670Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.363698Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.363998Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.365046Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.370954Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:18:56.371790Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:18:56.401932Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.401993Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.402227Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.405604Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:18:56.467113Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.684227Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:02.569087Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:02.569087Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] 
[2026-06-04T17:19:02.569087Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:02.569183Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] 
[2026-06-04T17:19:02.569191Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:02.569197Z] [nf-ef356b58dca9870f31d3801ff563936c-61ecd-hrdtf] [602_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec