File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/68096c3f838720870c12f75376b555/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-04T17:19:04.502820Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:19:04.503624Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:19:04.503636Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:19:04.503641Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:19:04.503645Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAyOxgb'
[2026-06-04T17:19:04.503649Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:19:04.503655Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:19:04.503658Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:19:04.503662Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:19:04.503666Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:19:04.503670Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:19:04.503675Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:19:04.503685Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:19:04.503697Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:19:04.504266Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:19:04.504392Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:19:04.510596Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:19:04.511577Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:19:04.511956Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:19:04.512423Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:19:04.512844Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.513658Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.513771Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.513850Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.513976Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.514045Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.514281Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.514511Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.515257Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.515685Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.516339Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.519075Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.519600Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.520111Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:19:04.520829Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.520963Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.521149Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.521229Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.521350Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.521752Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522301Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522379Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522496Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522567Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522700Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522768Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522896Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522965Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.523084Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.523154Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.523837Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524241Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524367Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524431Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524542Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524609Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524722Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524786Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524896Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.524959Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.525074Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.525139Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.525375Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.525767Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526304Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526371Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526486Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526554Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526748Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526816Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526926Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.526996Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.527103Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.527167Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.527276Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.527697Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528403Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528474Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528584Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528649Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528763Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528829Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.528938Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.529004Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.529112Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.529179Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.529291Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.529764Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530375Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530444Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530556Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530621Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530730Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.530795Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.546576Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.546837Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.546918Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547122Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547195Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547286Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547353Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547467Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547542Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:04.547591Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:19:04.551920Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.552760Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.553249Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.554042Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.555179Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.556457Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.557091Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.560351Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.561366Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:19:04.561968Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.567323Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:19:04.572578Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:19:04.577762Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:04.580454Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:04.585125Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:19:04.586953Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:19:04.588227Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:19:04.677996Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.678098Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.679067Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.679626Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.685676Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:19:04.686754Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:05.245971Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.247047Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.250448Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:19:05.713255Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.714300Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.718210Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:19:05.779204Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.780252Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.783539Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:05.844947Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.845052Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.846114Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.846462Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.853827Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:05.854908Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:19:05.915314Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.915413Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.916417Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.916858Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.920969Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:19:05.921662Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:05.982002Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.983048Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.987083Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:19:06.098172Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.099180Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.102726Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:19:06.164254Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.165328Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.168605Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:19:06.330627Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.331611Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.336009Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:19:06.396934Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.397812Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.401870Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:19:06.613126Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.614118Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.618101Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:19:06.678993Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.680010Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.683408Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:19:07.246328Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.247293Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.250962Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:19:07.312098Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.312959Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.316162Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:19:07.527787Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.527913Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.528787Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.529308Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.533195Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:19:07.534274Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:07.594525Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.594621Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.595496Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.595924Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.599384Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:07.600644Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:19:07.660796Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.661634Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.664698Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:19:07.726223Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.727108Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.731133Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:19:07.791716Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.792636Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.796884Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:19:07.825372Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.826170Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.829372Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:19:07.858605Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.859778Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.860117Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.862778Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.865035Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:19:07.866425Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:07.928572Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.928692Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.929407Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.929921Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.931912Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.933347Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:19:07.934051Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.937023Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:07.938279Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:19:07.998465Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.999160Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.003070Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:19:08.214631Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.215513Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.219014Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:19:08.430593Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.431350Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.434656Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:19:08.496120Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.496775Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.499927Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:19:08.561285Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.562151Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.565195Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:19:08.626648Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.627304Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.630619Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:08.692043Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.692664Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.695767Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:19:08.757121Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.757701Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.761101Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:19:08.773602Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.774303Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.777301Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:19:08.806443Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.806525Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.807106Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.807724Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.808126Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.811283Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:08.811958Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.812790Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:19:08.815592Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:19:08.844364Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.844436Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.844465Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.844964Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.845361Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.845782Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.849687Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:08.851374Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:08.852867Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:08.855404Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.855982Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.859730Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:19:08.888392Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.888490Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.889159Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.889602Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.892428Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:08.893683Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:08.921644Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.922133Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.924859Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:08.925792Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.926728Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.927186Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.929029Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.931066Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:19:08.932790Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:19:08.961446Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.962575Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.962979Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.965115Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.966933Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:19:08.968423Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:19:08.997719Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.998201Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.001043Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:09.062629Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.063113Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.066558Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:19:09.127339Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.127904Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.131104Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:09.192341Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.192865Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.195876Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:19:09.256970Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.471632Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.471730Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.472224Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.472558Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.475881Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:19:09.477022Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:19:09.537466Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.537553Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.569466Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.569899Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.572953Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:19:09.601838Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.966509Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.967011Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.969952Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:19:09.999335Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.113478Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.113915Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.117045Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:10.178116Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.178803Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.179184Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.182225Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:19:10.243454Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.708326Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.708746Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.711425Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:19:10.772840Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.773096Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.773224Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.773715Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.774337Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.778602Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:10.780842Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:10.803608Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:10.807251Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.807312Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.807331Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.807508Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.807788Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.810944Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:10.811654Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:10.839856Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.839955Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.840155Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:10.843119Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:10.904721Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:15.080648Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:23.392316Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:23.392316Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] 
[2026-06-04T17:19:23.392316Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:23.392446Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] 
[2026-06-04T17:19:23.392462Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:23.392469Z] [nf-1c68096c3f838720870c12f75376b555-d2469-b9sfl] [598_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec