File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/034ee360d39be9672aa20ba421d6b7/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-06-04T17:18:58.972392Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:58.973478Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:58.973505Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:58.973510Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:58.973514Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXTgR2lD'
[2026-06-04T17:18:58.973518Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:58.973523Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:58.973527Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:58.973530Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T17:18:58.973533Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:58.973537Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:58.973540Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:58.973544Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:58.973547Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:58.974278Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:58.974384Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:58.979960Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:58.980430Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:58.980637Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:58.980865Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:58.981155Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981434Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981520Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981588Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981701Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981766Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981937Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.981998Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982114Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982175Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982286Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982350Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982456Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982519Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.982865Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.983223Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.983445Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.983677Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.983961Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.984727Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.985721Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.986218Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.986303Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.986623Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987331Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:58.987414Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987534Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987596Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987705Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987767Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987876Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.987962Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.988075Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.988155Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.988630Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.988832Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.988943Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989007Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989115Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989175Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989286Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989348Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989457Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.989519Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990167Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990533Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990646Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990711Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990884Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.990949Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991054Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991116Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991224Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991284Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991396Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991456Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.991757Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992314Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992506Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992582Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992704Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992774Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992891Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.992957Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.993068Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.993144Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.993370Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.993949Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.009346Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.009857Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.009928Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.010101Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.010169Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.010257Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.010323Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.012291Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.012990Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:59.013110Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:59.013263Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.014133Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.014513Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.016109Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.016676Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.017267Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.017813Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.018541Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.020150Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.024014Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:18:59.025398Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:59.031680Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:18:59.036648Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:18:59.041135Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:18:59.041307Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:59.041411Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:18:59.155767Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.156626Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.159678Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:18:59.671940Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.672751Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.675771Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:59.736990Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.737860Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.740841Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:19:00.033731Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:19:00.054102Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.054170Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.054933Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.055334Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.058923Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:00.059721Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:19:00.120015Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.121033Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.123745Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:19:00.836337Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.837191Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.840289Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:00.951877Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.952719Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.955523Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-04T17:19:01.017097Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.017192Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.017232Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.017956Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.018532Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.019226Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.021909Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:19:01.023226Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:19:01.024179Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-04T17:19:01.084890Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.084957Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.084988Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.085678Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.087598Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.088275Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:01.088546Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.091232Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-04T17:19:01.092092Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-04T17:19:01.121576Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.122308Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.124229Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.125080Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:01.125496Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.128017Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-04T17:19:01.157870Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.158576Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.161234Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:01.190759Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.191539Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.194301Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:01.255848Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.256542Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.259345Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:19:01.621907Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.622646Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.625405Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-04T17:19:01.654941Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.655625Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.658144Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:19:01.687593Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.688269Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.690762Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-04T17:19:01.721514Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.721620Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.722226Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.722534Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.725793Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:19:01.726733Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:01.937283Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.938037Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.941001Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:19:02.002511Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.003236Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.006048Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:19:02.019285Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.019935Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.022743Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:02.036210Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.036854Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.039320Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:19:02.068828Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.069498Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.072390Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:02.077439Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.078037Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.080478Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:19:02.111328Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.111435Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.112042Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.112686Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.115467Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:19:02.116431Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:19:02.177874Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.178539Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.181636Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:02.644125Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.644779Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.647516Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-04T17:19:02.678380Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.679011Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.681622Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-04T17:19:02.743315Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.743406Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.743993Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.744335Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.747440Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:19:02.748629Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:03.159685Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.160366Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.162990Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-04T17:19:03.224668Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.225310Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.228717Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:03.289602Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.290239Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.293320Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-04T17:19:03.354664Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.355295Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.358156Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-04T17:19:03.419484Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.420122Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.423000Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:19:03.484427Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.484515Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.485038Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.485773Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.488524Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:19:03.489759Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.490371Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.490510Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:03.492979Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-04T17:19:03.522529Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.522619Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.523124Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.524618Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.525445Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:19:03.527976Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-04T17:19:03.557255Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.557774Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.560499Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-04T17:19:03.561833Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.562289Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.565002Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:19:03.594622Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.594711Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.595172Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.596768Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.597861Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:03.600082Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:03.661486Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.661592Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.662046Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.662685Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.665753Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:19:03.666908Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-04T17:19:03.696484Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.700154Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.914533Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.915014Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.918323Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-04T17:19:03.949294Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.314088Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.314614Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.317589Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-04T17:19:04.346881Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.378782Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.379193Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.381785Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-04T17:19:04.412094Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.676563Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.676957Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.679432Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:19:04.710242Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.974813Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.975269Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.977900Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-04T17:19:04.991320Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.991730Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.994232Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-04T17:19:05.007981Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.023778Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.023990Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.024130Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.024903Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.025501Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.028831Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:05.030028Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:05.031153Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:05.060710Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.060784Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.060806Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.060995Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.062636Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.063326Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:05.065077Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:05.094600Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.094662Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.094840Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.096726Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:05.126660Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.599233Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:17.861831Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:17.861831Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] 
[2026-06-04T17:19:17.861831Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:17.861890Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] 
[2026-06-04T17:19:17.861897Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:17.861903Z] [nf-c1034ee360d39be9672aa20ba421d6b7-c6829-dxbt7] [630_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec