cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo AlignmentStat HCC1395_BL.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_BL.sentieon.insert_size_metrics --algo QualDistribution HCC1395_BL.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_BL.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_BL.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 0.1s, est remaining 1.4s, peak mem 81MB, user 0.1s, sys 1.6s, output queue size 19
progress 10% @chr2:53000001, elapsed 0.1s, est remaining 1.2s, peak mem 81MB, user 0.3s, sys 3.4s, output queue size 23
progress 15% @chr2:204000001, elapsed 0.2s, est remaining 1.2s, peak mem 81MB, user 0.4s, sys 5.3s, output queue size 31
progress 20% @chr3:136000001, elapsed 0.3s, est remaining 1.1s, peak mem 81MB, user 0.5s, sys 7.2s, output queue size 22
progress 25% @chr4:106000001, elapsed 0.3s, est remaining 1.0s, peak mem 81MB, user 0.6s, sys 9.2s, output queue size 29
progress 30% @chr5:77000001, elapsed 0.4s, est remaining 0.9s, peak mem 81MB, user 0.7s, sys 11.1s, output queue size 26
progress 35% @chr6:56000001, elapsed 0.5s, est remaining 0.9s, peak mem 81MB, user 0.8s, sys 13.0s, output queue size 30
progress 40% @chr7:46000001, elapsed 0.5s, est remaining 0.8s, peak mem 81MB, user 0.9s, sys 15.0s, output queue size 22
progress 45% @chr8:31000001, elapsed 0.6s, est remaining 0.7s, peak mem 81MB, user 1.1s, sys 16.9s, output queue size 26
progress 50% @chr9:96000001, elapsed 0.7s, est remaining 0.7s, peak mem 81MB, user 1.1s, sys 19.3s, output queue size 18
progress 55% @chr10:82000001, elapsed 0.8s, est remaining 0.6s, peak mem 81MB, user 1.2s, sys 21.6s, output queue size 27
progress 60% @chr11:112000001, elapsed 0.8s, est remaining 0.5s, peak mem 81MB, user 1.3s, sys 23.5s, output queue size 31
progress 65% @chr13:2000001, elapsed 0.9s, est remaining 0.5s, peak mem 81MB, user 1.4s, sys 25.6s, output queue size 17
progress 70% @chr14:50000001, elapsed 1.0s, est remaining 0.4s, peak mem 81MB, user 1.4s, sys 27.5s, output queue size 24
progress 75% @chr16:1, elapsed 1.0s, est remaining 0.3s, peak mem 81MB, user 1.5s, sys 29.5s, output queue size 18
progress 80% @chr17:75000001, elapsed 1.1s, est remaining 0.3s, peak mem 81MB, user 1.7s, sys 31.4s, output queue size 16
progress 85% @chr20:45000001, elapsed 1.2s, est remaining 0.2s, peak mem 81MB, user 1.7s, sys 33.4s, output queue size 14
progress 90% @chrX:44000001, elapsed 1.2s, est remaining 0.1s, peak mem 96MB, user 2.1s, sys 34.1s, output queue size 114
progress 95% @chrY:34000001, elapsed 1.3s, est remaining 0.1s, peak mem 111MB, user 2.8s, sys 34.9s, output queue size 276
progress 100% @chr21:41000001, elapsed 2.0s, est remaining 0.0s, peak mem 135MB, user 5.7s, sys 36.7s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 51395360
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.471 user 18.682 sys 19.726 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.001 user 0.001 sys 2.045 real
idle: 74 calls 0.010 user 0.024 sys 50.323 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 141713408 mem 5.989 user 37.234 sys 3.095 real