cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:2000001, elapsed 0.0s, est remaining 0.8s, peak mem 423MB, user 0.1s, sys 1.5s, output queue size 118
progress 10% @chr2:142000001, elapsed 0.1s, est remaining 0.7s, peak mem 423MB, user 0.3s, sys 6.7s, output queue size 212
progress 15% @chr3:32000001, elapsed 0.1s, est remaining 0.6s, peak mem 423MB, user 0.5s, sys 12.3s, output queue size 373
progress 20% @chr3:16000001, elapsed 0.1s, est remaining 0.5s, peak mem 423MB, user 0.7s, sys 16.2s, output queue size 536
progress 25% @chr4:96000001, elapsed 0.2s, est remaining 0.5s, peak mem 423MB, user 0.9s, sys 21.8s, output queue size 697
progress 30% @chr5:93000001, elapsed 0.2s, est remaining 0.5s, peak mem 423MB, user 1.1s, sys 27.4s, output queue size 858
progress 35% @chr6:50000001, elapsed 0.2s, est remaining 0.4s, peak mem 423MB, user 1.3s, sys 33.0s, output queue size 194
progress 40% @chr7:17000001, elapsed 0.3s, est remaining 0.4s, peak mem 423MB, user 1.4s, sys 38.4s, output queue size 355
progress 45% @chr8:81000001, elapsed 0.3s, est remaining 0.4s, peak mem 423MB, user 1.5s, sys 43.7s, output queue size 518
progress 50% @chr8:68000001, elapsed 0.3s, est remaining 0.3s, peak mem 423MB, user 1.7s, sys 48.9s, output queue size 679
progress 55% @chr10:73000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 1.8s, sys 54.4s, output queue size 840
progress 60% @chr11:115000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 2.1s, sys 59.7s, output queue size 1002
progress 65% @chr13:107000001, elapsed 0.4s, est remaining 0.2s, peak mem 423MB, user 2.3s, sys 64.4s, output queue size 1164
progress 70% @chr14:90000001, elapsed 0.4s, est remaining 0.2s, peak mem 423MB, user 2.4s, sys 68.2s, output queue size 1326
progress 75% @chr16:8000001, elapsed 0.5s, est remaining 0.2s, peak mem 423MB, user 2.5s, sys 72.8s, output queue size 1487
progress 80% @chr17:64000001, elapsed 0.5s, est remaining 0.1s, peak mem 423MB, user 2.7s, sys 78.1s, output queue size 1649
progress 85% @chr20:54000001, elapsed 0.5s, est remaining 0.1s, peak mem 423MB, user 2.8s, sys 83.5s, output queue size 1812
progress 90% @chrX:24000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 3.1s, sys 88.3s, output queue size 1973
progress 95% @chrY:56000001, elapsed 0.6s, est remaining 0.0s, peak mem 423MB, user 3.4s, sys 93.8s, output queue size 2269
progress 100% @HLA-DQA1*02:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 423MB, user 3.6s, sys 110.3s, output queue size 5559
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000c06f2
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51111
output file size: 43431
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.009 real
"predict_filter": 171 calls 0.030 user 0.020 sys 0.104 real
advance: 3219322 calls 0.260 user 33.623 sys 34.908 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.003 sys 0.740 real
fetch_ref: 460 calls 0.001 user 0.121 sys 0.177 real
idle: 18143 calls 0.738 user 0.914 sys 520.508 real
init: 1 calls 0.213 user 0.043 sys 1.773 real
overall: 443830272 mem 4.977 user 115.253 sys 3.637 real