File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/5888ae167f060cadc4808ddb3994e4/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-06-04T17:18:52.789473Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:52.790581Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:52.790593Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:52.790597Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:52.790602Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDWseDM'
[2026-06-04T17:18:52.790606Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:52.790610Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:52.790614Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:52.790618Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-04T17:18:52.790621Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:52.790625Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:52.790629Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:52.790632Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:52.790636Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:52.791134Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:52.791250Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:52.797175Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:52.798095Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:52.798220Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:52.798595Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:52.798879Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.800212Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.800320Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.800886Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.801295Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.802080Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.803496Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.803926Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:52.804745Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805073Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805452Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805676Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805795Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805859Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.805977Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806043Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806152Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806215Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806325Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806389Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806570Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806634Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.806912Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807176Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807293Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807354Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807471Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807534Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807644Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807714Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807826Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.807902Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808008Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808067Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808391Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808703Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808822Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808888Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.808999Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809063Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809174Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809238Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809348Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809412Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809517Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809582Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809702Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.809985Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810452Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810521Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810633Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810698Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810812Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810875Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.810985Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811049Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811159Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811225Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811332Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811406Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.811730Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812207Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812326Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812391Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812501Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812569Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812677Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812742Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812853Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.812924Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.813032Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.813096Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.813204Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.813501Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832544Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832650Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832731Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832913Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.832984Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.833088Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.833155Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.833281Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.833356Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:52.833412Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:52.834051Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.835039Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.835590Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.836744Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.837663Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.838699Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.839774Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.842392Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.844525Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:18:52.845088Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.845868Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:18:52.850870Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:52.855488Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:18:52.859376Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:18:52.863444Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:52.864553Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:18:52.867591Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:18:52.962408Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.962510Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.962537Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.963446Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.964004Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.964824Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:52.970074Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:18:52.972303Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:18:52.972967Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:18:53.380341Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.381273Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.384479Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-04T17:18:53.445570Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.446397Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.449536Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:53.510778Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.511570Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.514893Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:18:53.926724Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.927568Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.930637Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:53.991955Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.993064Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:53.996095Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:18:54.157807Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.158598Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.161792Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-04T17:18:54.222927Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.223015Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.223808Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.224292Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.228355Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:18:54.229104Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:18:54.289167Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.289892Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.293064Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-04T17:18:54.354136Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.355091Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.358576Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:18:54.419697Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.419780Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.420580Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.420950Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.424424Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-04T17:18:54.425516Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:18:54.485425Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.486275Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.489842Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:18:54.518892Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.519908Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:54.522728Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:18:55.135328Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.136218Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.139430Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:55.200588Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.201355Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.204436Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:55.265753Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.266567Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.270336Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-04T17:18:55.332050Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.332808Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.335581Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-04T17:18:55.340544Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.341213Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.344981Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-04T17:18:55.405291Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.405373Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.406046Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.406434Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.409712Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-04T17:18:55.410956Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:18:55.470698Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.471481Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.474540Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:18:55.686107Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.686860Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.690011Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:18:55.801371Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.802152Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.805901Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:18:55.916657Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.917433Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:55.920995Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:18:56.132560Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.133378Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.136790Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-04T17:18:56.149516Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.150185Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.153134Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-04T17:18:56.182085Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.182794Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.186674Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:56.199732Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.200484Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.204017Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-04T17:18:56.264892Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.264974Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.265009Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.265672Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.266015Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.266457Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.270783Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-04T17:18:56.272533Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:18:56.273981Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:56.331530Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.331625Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.332283Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.332650Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.336314Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-04T17:18:56.337565Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:18:56.397170Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.397816Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.400879Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-04T17:18:56.461947Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.462630Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.466166Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-04T17:18:56.527076Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.527163Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.527807Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.528208Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.531529Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-04T17:18:56.564886Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-04T17:18:56.593365Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.593456Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.594040Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.594450Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.597670Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-04T17:18:56.598687Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-04T17:18:56.658903Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.659004Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.659552Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.660027Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.663781Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-04T17:18:56.665213Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:56.724553Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.725340Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:56.729301Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:18:57.040877Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.041582Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.045146Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-04T17:18:57.105870Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.106448Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.109680Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-04T17:18:57.170679Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.171444Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.174864Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-04T17:18:57.235822Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.236378Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.239333Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-04T17:18:57.268456Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.268540Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.269028Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.269550Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.273554Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-04T17:18:57.274550Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-04T17:18:57.278161Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.278688Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.281488Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-04T17:18:57.310585Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.310667Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.310699Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.311149Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.311625Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.312061Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.317069Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-04T17:18:57.318417Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:57.319926Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:18:57.377108Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.377185Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.377680Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.378109Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.381312Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-04T17:18:57.382077Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:57.442320Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.442395Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.442917Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.445856Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-04T17:18:57.507058Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.821867Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.821958Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.822398Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.822950Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.827109Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-04T17:18:57.827875Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-04T17:18:57.888016Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.888097Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.888146Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.888628Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:57.891984Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-04T17:18:57.953146Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.317864Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.318368Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.321983Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-04T17:18:58.383203Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.647798Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.648319Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.651818Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-04T17:18:58.713032Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.077975Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.078456Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.081800Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-04T17:18:59.143143Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.143425Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.143561Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.143909Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.144119Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.149753Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:18:59.150016Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:18:59.151274Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:18:59.209089Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.209160Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.209184Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.209395Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.209895Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.213610Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:18:59.215261Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:18:59.242415Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.242494Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.242714Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.246087Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:18:59.275435Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.399132Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:11.679181Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:11.679181Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] 
[2026-06-04T17:19:11.679181Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:11.679291Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] 
[2026-06-04T17:19:11.679306Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:11.679314Z] [nf-105888ae167f060cadc4808ddb3994e4-85b21-25mrn] [679_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec