[2026-06-04T17:19:01.728860Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:19:01.730005Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:19:01.730019Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:19:01.730025Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:19:01.730029Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXe3ferx'
[2026-06-04T17:19:01.730033Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:19:01.730039Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:19:01.730042Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:19:01.730046Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:19:01.730050Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:19:01.730054Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:19:01.730058Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:19:01.730062Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:19:01.730067Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:19:01.730639Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:19:01.730766Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:19:01.736701Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:19:01.738003Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:19:01.738411Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:19:01.738714Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:19:01.739080Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739528Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739623Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739695Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739816Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739882Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739999Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740061Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740379Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740713Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740781Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.741183Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.741620Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.742375Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.742591Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.744848Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:19:01.745058Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.745406Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.745722Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.745795Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746007Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746078Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746190Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746258Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746510Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746582Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.746974Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747219Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747338Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747404Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747520Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747592Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747720Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747785Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747899Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747964Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.748077Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.748149Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.748507Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.748846Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.748965Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749047Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749171Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749237Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749345Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749409Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749521Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749639Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749754Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.749820Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.750223Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.750666Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751207Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751273Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751396Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751460Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751580Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751647Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751764Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751828Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.751949Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.752013Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.752126Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.752193Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.752680Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.753273Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.753597Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.754141Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.754782Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.754861Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.754976Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.755044Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.755365Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.755890Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.757805Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758408Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758544Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758620Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758732Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758798Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758911Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.758973Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.759083Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.759145Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.759256Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.759326Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.759617Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760243Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760360Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760424Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760535Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760600Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760711Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760778Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760890Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.760952Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.761085Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.761152Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.778538Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.779021Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.779197Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.779413Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.780575Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.781203Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.781455Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.781885Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.782496Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.782819Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.783399Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.783967Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.785055Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.785861Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.788232Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.788476Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:01.789041Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:19:01.789673Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:19:01.790055Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.791298Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.798560Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:19:01.798834Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:19:01.801138Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:19:01.805204Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:19:01.808343Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:19:01.809933Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:01.812797Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:19:01.876239Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.876339Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.876372Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.877296Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.877657Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.878507Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.880641Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.886185Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:19:01.887484Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:19:01.889741Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.890802Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:19:01.895274Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:01.956317Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.957367Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.962813Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:19:02.474877Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.476036Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.479591Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:19:02.691256Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.692384Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.696346Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:02.757084Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.758196Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.761363Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-04T17:19:02.822734Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.823730Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.826750Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:19:02.938438Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.939580Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.943481Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:19:03.405217Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.405304Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.406255Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.406796Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.410607Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:19:03.411538Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:19:03.472026Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.473097Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.476502Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:19:03.939047Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.940022Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.943230Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:19:04.004921Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.005043Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.006033Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.006379Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.009756Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-04T17:19:04.011004Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-04T17:19:04.072085Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.072190Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.073170Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.073509Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.077397Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:19:04.078663Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:19:04.137766Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.138735Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.141660Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-04T17:19:04.203048Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.203999Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.207746Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-04T17:19:04.236308Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.237353Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.237984Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.240863Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.241717Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:19:04.244704Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.245103Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:19:04.245902Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.248701Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-04T17:19:04.261770Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.262642Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.265941Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-04T17:19:04.294608Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.295554Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.298706Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:19:04.311798Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.311890Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.312675Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.313087Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.317130Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-04T17:19:04.317658Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:19:04.377418Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.377506Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.377531Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.378361Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.378823Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.379127Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.383754Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-04T17:19:04.385385Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-04T17:19:04.386627Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:19:04.444529Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.444626Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.445450Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.445772Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.449801Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:19:04.450652Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:19:04.453826Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.454643Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.457568Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:19:05.170702Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.171608Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.175151Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:19:05.204067Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.204207Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.205453Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.205998Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.209968Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:19:05.210694Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:19:05.272199Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.272295Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.273067Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.273767Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.277186Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-04T17:19:05.307581Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:19:05.338227Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.338331Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.339078Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.339400Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.343042Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:19:05.343660Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:19:05.404548Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.406373Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.409333Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-04T17:19:05.438481Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.439271Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.442364Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-04T17:19:05.503669Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.504514Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.507689Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:19:05.536577Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.537362Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.540119Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-04T17:19:05.601766Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.602591Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.605934Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-04T17:19:05.634720Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.634801Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.635522Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.635893Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.638744Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-04T17:19:05.639823Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-04T17:19:05.668487Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.670080Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.670438Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.670513Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.672732Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.673146Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.673684Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-04T17:19:05.676203Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-04T17:19:05.677354Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:19:05.705450Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.705545Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.706206Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.706779Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.709736Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:19:05.711036Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:19:05.871528Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.872274Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.875744Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:19:05.904626Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.905350Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.908199Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-04T17:19:05.937389Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.937461Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.938097Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.938507Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.942530Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-04T17:19:05.943648Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:19:06.003712Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.004477Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.007859Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:19:06.036808Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.037496Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.040352Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-04T17:19:06.069602Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.070268Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.073390Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:19:06.134559Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.135253Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.138277Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-04T17:19:06.167455Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.168109Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.171180Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:19:06.200582Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.201249Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.204124Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:19:06.265745Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.266434Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.269370Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-04T17:19:06.331086Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.331743Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.334772Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:19:06.696934Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.697751Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.700715Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-04T17:19:06.762056Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.762765Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.766085Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-04T17:19:06.827238Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.827965Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.831461Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:19:07.193362Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.194132Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.197742Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:19:07.309127Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.309792Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.312692Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-04T17:19:07.374054Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.374142Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.374164Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.374834Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.375169Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.375501Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.380322Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-04T17:19:07.380781Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-04T17:19:07.381647Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-04T17:19:07.440616Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.440706Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.440730Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.441287Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.441610Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.442153Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.446557Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T17:19:07.447127Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:19:07.447798Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-04T17:19:07.474893Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.475672Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.476118Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.478800Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.480570Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:19:07.481029Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.481683Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.481951Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:19:07.484891Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-04T17:19:07.513898Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.514562Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.517548Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:19:07.530695Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.531226Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.534375Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-04T17:19:07.547301Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.547379Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.547888Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.548269Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.551502Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-04T17:19:07.552792Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:19:07.580373Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.580468Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.580970Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.584209Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-04T17:19:07.612995Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.613597Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.616348Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-04T17:19:07.617280Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.649228Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.649297Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.649735Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.652184Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T17:19:07.714818Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.979541Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.980124Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.983904Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T17:19:08.044799Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.060798Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.061329Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.064175Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-04T17:19:08.093308Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.093839Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.096686Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-04T17:19:08.097560Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.129695Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.747795Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.748348Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.751581Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T17:19:14.812848Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.813159Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.813295Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.813627Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.813923Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.818795Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:14.820187Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:14.821510Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:14.846931Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.847000Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.847224Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.847800Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.849891Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.850127Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:14.852680Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:14.882265Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.882334Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.882519Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:14.885315Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:14.946856Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:20.713640Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:34.849450Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:34.849450Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] 
[2026-06-04T17:19:34.849450Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:34.849561Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] 
[2026-06-04T17:19:34.849570Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:34.849579Z] [nf-2f791272a8c6e8fb541c5693601ee285-86be3-wpbnm] [641_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec