Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/dbb57de3dd22798b9c1264bdbca50b/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/52138fe270ba985f53329653a3b6d5/germline_control_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/b7abb6b33071fe115b7af283c5714a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/b7abb6b33071fe115b7af283c5714a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/52138fe270ba985f53329653a3b6d5/germline_control_1.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/dbb57de3dd22798b9c1264bdbca50b/germline_control_1.haplotyper.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   358 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_1.dv_only_sites.vcf.gz