File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/b8986ad5bb8381ed16cb00e341af37/.command.err
Size
61.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[2026-06-04T17:18:58.658073Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:18:58.660771Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:18:58.660801Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:18:58.660807Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:18:58.660811Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXm4K5Nd'
[2026-06-04T17:18:58.660815Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:18:58.660819Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:18:58.660823Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:18:58.660827Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-06-04T17:18:58.660830Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:18:58.660834Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:18:58.660837Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:18:58.660841Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:18:58.660845Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:18:58.661691Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:18:58.661759Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:18:58.667468Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:18:58.668052Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:18:58.668266Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:18:58.668453Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:18:58.668603Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.669136Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.669689Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.669963Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.670107Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.671665Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.671810Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.672330Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:18:58.672526Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.672685Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.672978Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.673137Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.673471Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.673691Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.673903Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.673968Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674073Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674135Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674242Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674306Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674516Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674588Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674699Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.674771Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675068Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675288Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675458Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675519Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675628Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675694Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675805Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.675895Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676006Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676066Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676177Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676242Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676542Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676822Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.676942Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.677001Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.677108Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.677166Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.677272Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.677332Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678241Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678519Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678633Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678749Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678864Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.678930Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679038Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679099Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679205Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679267Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679378Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679438Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.679867Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680172Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680282Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680343Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680451Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680509Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680618Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680678Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680783Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.680847Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.695542Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.695990Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696058Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696210Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696279Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696457Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696612Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696722Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.696788Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:18:58.697906Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:18:58.698075Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.699000Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.699416Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.699974Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.701546Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.705079Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:18:58.706838Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:18:58.708940Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:18:58.710543Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.711351Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.711596Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:18:58.712028Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.712630Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.716863Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:18:58.718255Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:18:58.720060Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:18:58.721322Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:18:58.828104Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.828875Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.832066Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:18:58.893435Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.894245Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:18:58.896733Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:18:59.459392Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.460477Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.463676Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:18:59.775030Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.776061Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.779102Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:18:59.940362Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.941175Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:18:59.944169Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:19:00.155850Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.155957Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.156684Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.157218Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.160793Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:19:00.161875Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:19:00.373792Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.374631Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.377718Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:19:00.439162Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.439950Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.442686Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-04T17:19:00.472055Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.472804Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.475353Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.475693Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-04T17:19:00.476419Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.479001Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:19:00.508561Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.509307Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.512052Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:19:00.723886Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.724698Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.727767Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-04T17:19:00.790132Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.790903Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.793598Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-04T17:19:00.855134Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.855875Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.858581Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-04T17:19:00.888023Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.888725Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.891448Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:19:00.896850Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.897469Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.899857Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:19:00.961866Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.962581Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.965315Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-04T17:19:00.994772Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.995446Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:00.998156Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:19:01.059954Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.060633Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.063292Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:19:01.125266Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.125948Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.128711Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:19:01.541072Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.541746Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.544401Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-04T17:19:01.575010Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.575659Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.578304Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:19:01.640046Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.640732Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.643895Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:19:01.705027Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.705136Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.705754Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.706337Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.709271Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-04T17:19:01.738813Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-04T17:19:01.739626Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.739688Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740253Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.740871Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.743631Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-04T17:19:01.744394Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-04T17:19:01.744656Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.745183Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.747561Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-04T17:19:01.777347Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.777429Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.777456Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.778087Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.778701Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.778985Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:01.782011Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:19:01.783799Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:19:01.784904Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:19:02.146402Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.147040Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.149826Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-04T17:19:02.179372Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.180306Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.181875Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.182673Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.183059Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-04T17:19:02.185134Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-04T17:19:02.214617Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.215224Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.217528Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-04T17:19:02.224117Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.224636Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.227191Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-04T17:19:02.257552Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.257636Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.258166Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.258751Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.261630Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:19:02.524257Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.524410Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.524953Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.526671Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.527437Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-04T17:19:02.529800Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-04T17:19:02.559071Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.559129Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.559619Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.560181Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.562969Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-04T17:19:02.563890Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:19:02.624400Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.624967Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.627872Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:19:02.839954Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.840526Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.843480Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-04T17:19:02.844391Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.844828Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.847416Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-04T17:19:02.876907Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.877007Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.877479Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.878071Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.880921Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-04T17:19:02.881914Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:19:02.911562Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.912076Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:02.914847Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:19:03.176760Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.177318Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.180003Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-04T17:19:03.209577Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.210093Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.212771Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-04T17:19:03.274394Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.388791Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.389279Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.392228Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-04T17:19:03.422972Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.423062Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.423484Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.425874Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-04T17:19:03.455288Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.487248Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.487692Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.490392Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-04T17:19:03.521083Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.936091Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.936494Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.939116Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-04T17:19:04.000820Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.265152Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.265572Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.268033Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-04T17:19:04.297609Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.262503Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-04T17:19:05.263442Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.263504Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.263872Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.266212Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-04T17:19:05.295855Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.296078Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.296192Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.296791Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.297381Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.300164Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:05.301107Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:05.303071Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:05.332459Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.332527Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.332547Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.332724Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.334221Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.335715Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:05.336460Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:05.367576Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.367646Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.367806Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.370039Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:05.399754Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:09.270853Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:17.549443Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:17.549443Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] 
[2026-06-04T17:19:17.549443Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:17.549510Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] 
[2026-06-04T17:19:17.549517Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:17.549523Z] [nf-27b8986ad5bb8381ed16cb00e341af37-ce1ef-jsff5] [642_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec