.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (HCC1395_tumor)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/fe2c9921b7a84514f06b369ff4a543/.command.sh
Size: 276 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (HCC1395_tumor)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py HCC1395_tumor.recalibrated.bam.bai > HCC1395_tumor.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS