File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/6f53cb290d9bcd980aea093c66e16b/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-jfz4egeg because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-04 17:23:49,857 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-04 17:23:50,681 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-04 17:23:50,856 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-04 17:23:51,861 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-04 17:23:51,929 - cnv_pipe.batch.run_model - INFO - Processing cluster 987 with 186 probes
2026-06-04 17:23:52,300 - cnv_pipe.batch.run_model.cluster987 - INFO - Child process started for cluster 987 with 186 probes
2026-06-04 17:24:46,908 - cnv_pipe.batch.run_model.cluster987 - INFO - Child process finished cluster 987. Wrote cluster_987_samples.csv and cluster_987_params.csv
2026-06-04 17:24:46,910 - cnv_pipe.batch.run_model - INFO - Cluster 987 finished in 54.98 seconds. Status: SUCCESS