Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/cd82047e5f3d430250f8d5821e87f6/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/cd82047e5f3d430250f8d5821e87f6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a990a08c35878a9f8edbfb86b22de5/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a990a08c35878a9f8edbfb86b22de5/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-04T17:19:03.215952Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T17:19:03.216750Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T17:19:03.216761Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T17:19:03.216765Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T17:19:03.216770Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXS2Hze3'
[2026-06-04T17:19:03.216774Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T17:19:03.216779Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T17:19:03.216782Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T17:19:03.216786Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] memMb: 761556
[2026-06-04T17:19:03.216789Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T17:19:03.216793Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T17:19:03.216797Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T17:19:03.216800Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T17:19:03.216806Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T17:19:03.217336Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T17:19:03.217475Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T17:19:03.223367Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T17:19:03.224745Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T17:19:03.224933Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T17:19:03.225329Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T17:19:03.225709Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.226452Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.226548Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.226623Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.226742Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.227038Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.227487Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.227675Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.227855Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.228911Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.229113Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.231321Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.231811Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.232096Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.232250Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T17:19:03.232398Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.232540Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.232610Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.233102Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.233490Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.233953Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234028Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234156Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234225Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234348Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234413Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234849Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.234918Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.235285Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.235953Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236114Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236213Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236343Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236412Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236532Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236598Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236717Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236784Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.236910Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.237234Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.237735Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.237804Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.237915Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.237981Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238089Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238153Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238270Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238335Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238518Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238583Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.238851Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239312Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239427Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239493Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239607Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239671Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239780Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.239975Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.240098Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.240165Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.240284Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.240400Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.240848Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.241306Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.258518Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.258797Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.258898Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.259150Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.259230Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.259359Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.259727Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.260114Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.260231Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.260495Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T17:19:03.261225Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T17:19:03.261473Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.263838Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.264758Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.265825Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.266593Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.267499Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.268542Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.270877Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.273890Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:19:03.276990Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:19:03.281301Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:19:03.285850Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:19:03.290098Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:19:03.291490Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:19:03.295328Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:19:03.356366Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.357193Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.360349Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:19:03.365099Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.365800Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.370773Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:19:03.375173Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:19:03.383579Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.383646Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.384381Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.384690Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.390945Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:19:03.391343Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:19:03.450178Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.451066Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.455274Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:19:03.617349Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.618489Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.621659Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:19:03.883530Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.884706Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.887836Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-04T17:19:03.917246Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.918374Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.921648Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-04T17:19:03.922229Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.923285Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.926864Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:19:03.955702Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.956766Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:03.960173Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:19:04.321905Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.322973Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.326007Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-04T17:19:04.387100Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.387856Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.390846Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-04T17:19:04.452018Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.452110Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.452827Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.453264Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.457187Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:19:04.458280Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:19:04.518653Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.519415Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.522310Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-04T17:19:04.583759Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.584543Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.587510Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-04T17:19:04.649081Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.649870Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:04.653249Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:19:05.015194Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.016097Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.019483Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:19:05.032676Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.033404Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.036714Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-04T17:19:05.097897Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.098633Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.102193Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:19:05.163110Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.163218Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.163940Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.164314Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.168230Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:19:05.169596Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:19:05.229531Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.230258Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.233433Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-04T17:19:05.294370Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.295067Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.298183Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-04T17:19:05.359535Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.360282Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.363230Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:19:05.424606Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.425504Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.428649Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-04T17:19:05.490011Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.490758Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.493933Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:19:05.523039Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.523967Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.527526Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-04T17:19:05.588761Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.589736Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.592800Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:19:05.654081Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.654970Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.658309Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-04T17:19:05.663083Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.663915Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.666962Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-04T17:19:05.696058Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.696955Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.700113Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:19:05.700933Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.701742Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.704681Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-04T17:19:05.709566Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.709662Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.710360Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.710748Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.713390Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-04T17:19:05.715706Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:19:05.777106Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.777213Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.778046Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.778564Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.782365Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-04T17:19:05.783254Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:19:05.843358Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.844150Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.847176Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-04T17:19:05.908622Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.909507Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.912936Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:19:05.974076Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.974862Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-04T17:19:05.978019Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-04T17:19:06.007102Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.007952Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.011227Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-04T17:19:06.011984Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.012711Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.015525Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-04T17:19:06.044771Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.045570Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.048828Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:19:06.049582Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.050234Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.053634Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-04T17:19:06.114516Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.114637Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.115464Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.115998Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.119386Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-04T17:19:06.120219Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-04T17:19:06.180523Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.180658Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.181364Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.182010Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.185843Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-04T17:19:06.186916Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:19:06.246793Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.246881Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.247506Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.250676Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-04T17:19:06.311793Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.311913Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.312570Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.315358Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-04T17:19:06.376860Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.491313Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.492057Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.495065Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-04T17:19:06.556336Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.770988Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.771634Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.774373Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-04T17:19:06.835979Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.852061Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.852542Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-04T17:19:06.856205Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-04T17:19:06.916976Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.181610Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.182091Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.184963Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-04T17:19:07.246220Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.410776Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.411276Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.414081Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-04T17:19:07.475435Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.475715Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.475877Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.476194Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.476451Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.481402Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T17:19:07.482756Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T17:19:07.484128Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T17:19:07.509207Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.509277Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.509503Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.511179Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.513545Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T17:19:07.513873Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.514565Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T17:19:07.545648Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.545721Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.545916Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T17:19:07.548722Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T17:19:07.578001Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T17:19:08.895032Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T17:19:13.771331Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T17:19:13.771331Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] 
[2026-06-04T17:19:13.771331Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T17:19:13.771419Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] 
[2026-06-04T17:19:13.771426Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T17:19:13.771433Z] [nf-6ccd82047e5f3d430250f8d5821e87f6-da9cc-hlwdj] [593_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec